Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18961 | 3' | -56.7 | NC_004683.1 | + | 51917 | 1.08 | 0.001008 |
Target: 5'- cAGCACCUACGUGAUGGUCGACGGGCGc -3' miRNA: 3'- -UCGUGGAUGCACUACCAGCUGCCCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 46650 | 0.65 | 0.687448 |
Target: 5'- cGCACCaugACGacccguaacgagacUGGgcugcUGGUccCGACGGGCGg -3' miRNA: 3'- uCGUGGa--UGC--------------ACU-----ACCA--GCUGCCCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 44260 | 0.66 | 0.669206 |
Target: 5'- uGGCACCgaagACGacgcGGcUCGACGcGGCGa -3' miRNA: 3'- -UCGUGGa---UGCacuaCC-AGCUGC-CCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 43138 | 0.66 | 0.669206 |
Target: 5'- uGCGgCUGCGUGGccGGaUCGACuGGCu -3' miRNA: 3'- uCGUgGAUGCACUa-CC-AGCUGcCCGc -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 16589 | 0.66 | 0.647625 |
Target: 5'- uGGCGUCgAUGUGcgGGUCGACcuguGGCGg -3' miRNA: 3'- -UCGUGGaUGCACuaCCAGCUGc---CCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 20493 | 0.66 | 0.636808 |
Target: 5'- uGGgGCCg--GUGGUGGagGcCGGGCGg -3' miRNA: 3'- -UCgUGGaugCACUACCagCuGCCCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 21685 | 0.67 | 0.625988 |
Target: 5'- cGCAUCaucacCGgGGUGGUCGguGCGGGUGg -3' miRNA: 3'- uCGUGGau---GCaCUACCAGC--UGCCCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 14073 | 0.67 | 0.604372 |
Target: 5'- cGCACCcgagUGCGUGAUGGUCaagaaaaacgGACucaaGGGUc -3' miRNA: 3'- uCGUGG----AUGCACUACCAG----------CUG----CCCGc -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 2709 | 0.68 | 0.56042 |
Target: 5'- cGGC-CCgauugggucgACGUGGUGGUCGaggaacggaugguGCGcGGCGg -3' miRNA: 3'- -UCGuGGa---------UGCACUACCAGC-------------UGC-CCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 41247 | 0.74 | 0.236302 |
Target: 5'- uGCGCCUGCGUGAcUGGcUG-UGGGCGc -3' miRNA: 3'- uCGUGGAUGCACU-ACCaGCuGCCCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 29694 | 0.73 | 0.275023 |
Target: 5'- aGGCGCCggcUACGcuugGAUGGUCGACGaaaGCGg -3' miRNA: 3'- -UCGUGG---AUGCa---CUACCAGCUGCc--CGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 13987 | 0.71 | 0.393457 |
Target: 5'- cGGCACCcgUugGUGAcgcugUGGUCcuacGACgGGGCGa -3' miRNA: 3'- -UCGUGG--AugCACU-----ACCAG----CUG-CCCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 25462 | 0.68 | 0.509148 |
Target: 5'- cAGUACCUcuACGUGGUGGccaccgCGGCGcuGGCc -3' miRNA: 3'- -UCGUGGA--UGCACUACCa-----GCUGC--CCGc -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 9687 | 0.68 | 0.540336 |
Target: 5'- gGGCACCaACGcGGUGGcCGACcgugaGGCGu -3' miRNA: 3'- -UCGUGGaUGCaCUACCaGCUGc----CCGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 23906 | 0.68 | 0.540336 |
Target: 5'- cAGCGCCgcguagGCGUGgcGGcCGACGG-Ca -3' miRNA: 3'- -UCGUGGa-----UGCACuaCCaGCUGCCcGc -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 52551 | 0.66 | 0.658427 |
Target: 5'- cGCGagacCCUGCGUGGUGauGUCG-CGcGGCa -3' miRNA: 3'- uCGU----GGAUGCACUAC--CAGCuGC-CCGc -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 32675 | 0.73 | 0.303559 |
Target: 5'- gAGCGgCUACGUGGUGGUgaACGaGGCu -3' miRNA: 3'- -UCGUgGAUGCACUACCAgcUGC-CCGc -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 44684 | 0.72 | 0.334317 |
Target: 5'- cAGCcuucGCCUcgucgaACGUGA-GGUCGGCGGcGCGc -3' miRNA: 3'- -UCG----UGGA------UGCACUaCCAGCUGCC-CGC- -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 46516 | 0.72 | 0.342354 |
Target: 5'- cGGCuccaagACCUgguuGCGgcacGUGGUCGACGGGCa -3' miRNA: 3'- -UCG------UGGA----UGCac--UACCAGCUGCCCGc -5' |
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18961 | 3' | -56.7 | NC_004683.1 | + | 4586 | 0.7 | 0.402442 |
Target: 5'- --aACCUGCGcGGU-GUCGACGGGUGc -3' miRNA: 3'- ucgUGGAUGCaCUAcCAGCUGCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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