Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18961 | 5' | -58.9 | NC_004683.1 | + | 49218 | 0.66 | 0.510426 |
Target: 5'- uCGCGCa-GCAGaacGGcgCCGaCUGAUGCa -3' miRNA: 3'- -GUGCGggCGUCa--CCuaGGC-GACUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 19625 | 0.66 | 0.510426 |
Target: 5'- gACGagaUCG-AGUGGAUCCGCgauCGCg -3' miRNA: 3'- gUGCg--GGCgUCACCUAGGCGacuGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 53410 | 0.66 | 0.510426 |
Target: 5'- uGCGCCCcCGGgugauUGGAccCCGUUcGACGCg -3' miRNA: 3'- gUGCGGGcGUC-----ACCUa-GGCGA-CUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 22623 | 0.67 | 0.500306 |
Target: 5'- cCACGCCCacCAGUuGAUUCGg-GGCGCa -3' miRNA: 3'- -GUGCGGGc-GUCAcCUAGGCgaCUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 39845 | 0.67 | 0.500306 |
Target: 5'- uGCGCUCGCcgAGaGGuugCUGCUGACGa -3' miRNA: 3'- gUGCGGGCG--UCaCCua-GGCGACUGCg -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 46921 | 0.67 | 0.490275 |
Target: 5'- gGCGCUgccgacgugcaCGaCGGUGGAgcggcacgcgCUGCUGAUGCg -3' miRNA: 3'- gUGCGG-----------GC-GUCACCUa---------GGCGACUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 45039 | 0.67 | 0.480338 |
Target: 5'- aCGCGCUgGCcaaGGUGcacaCGCUGGCGCu -3' miRNA: 3'- -GUGCGGgCG---UCACcuagGCGACUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 18875 | 0.67 | 0.480338 |
Target: 5'- gGCGCCCGacuucGAUCCGCagGAgGCg -3' miRNA: 3'- gUGCGGGCgucacCUAGGCGa-CUgCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 40318 | 0.67 | 0.470501 |
Target: 5'- gCGCGCCUGCAGcucggcgcGGGcCUGCUcGGCGUc -3' miRNA: 3'- -GUGCGGGCGUCa-------CCUaGGCGA-CUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 50008 | 0.67 | 0.460767 |
Target: 5'- gCAC-CCUGCAGgaccGGAUCCGUcaaaucgaacgGGCGCu -3' miRNA: 3'- -GUGcGGGCGUCa---CCUAGGCGa----------CUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 56939 | 0.67 | 0.451141 |
Target: 5'- cCAUGCCCGCgaggugucgaccGGUGGGccaCUGaacaUGGCGCg -3' miRNA: 3'- -GUGCGGGCG------------UCACCUa--GGCg---ACUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 12030 | 0.67 | 0.451141 |
Target: 5'- gCGCGCCCGCGcgGGGcuaCCGCcgGAgGCu -3' miRNA: 3'- -GUGCGGGCGUcaCCUa--GGCGa-CUgCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 12224 | 0.67 | 0.451141 |
Target: 5'- cCACGCCCGCcggGGcGGGagCGCccGGCGUg -3' miRNA: 3'- -GUGCGGGCG---UCaCCUagGCGa-CUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 4427 | 0.67 | 0.451141 |
Target: 5'- -uCGCCCGCAGUugaacacccGGccgaGUCCGaC-GACGCg -3' miRNA: 3'- guGCGGGCGUCA---------CC----UAGGC-GaCUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 10602 | 0.68 | 0.441627 |
Target: 5'- gCGCGCCgCGCugaGGUGcgggcGGUCCGC-GAUGCc -3' miRNA: 3'- -GUGCGG-GCG---UCAC-----CUAGGCGaCUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 296 | 0.68 | 0.441627 |
Target: 5'- gGCGCUCGgAGUgGGAUCCG-UGACc- -3' miRNA: 3'- gUGCGGGCgUCA-CCUAGGCgACUGcg -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 33973 | 0.68 | 0.441627 |
Target: 5'- -cCGCUCGCGGUGGA-CCaGCUcGugGg -3' miRNA: 3'- guGCGGGCGUCACCUaGG-CGA-CugCg -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 21300 | 0.68 | 0.438794 |
Target: 5'- aACGCCCGguGUGu-UCgGCUcggaccucggacugGGCGCg -3' miRNA: 3'- gUGCGGGCguCACcuAGgCGA--------------CUGCG- -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 42132 | 0.68 | 0.422945 |
Target: 5'- -cCGCCUGCccguGUGcccGGUCUGCUGGCGg -3' miRNA: 3'- guGCGGGCGu---CAC---CUAGGCGACUGCg -5' |
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18961 | 5' | -58.9 | NC_004683.1 | + | 51639 | 0.68 | 0.413783 |
Target: 5'- --aGCCCGCGGUcgcgcugccgGGGUUCGUUgGugGCc -3' miRNA: 3'- gugCGGGCGUCA----------CCUAGGCGA-CugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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