miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 3' -66.6 NC_004683.1 + 4488 0.66 0.212557
Target:  5'- gGGCGAUUCGGGagucucggccucaUCGGCGUGGgACUc- -3'
miRNA:   3'- -CCGCUGGGCCC-------------GGCCGCGCCgUGGuu -5'
18962 3' -66.6 NC_004683.1 + 42719 0.66 0.212557
Target:  5'- cGGCGGCCgccgaucucgucgCGGGCguCGuCGCGGuCGCCGAc -3'
miRNA:   3'- -CCGCUGG-------------GCCCG--GCcGCGCC-GUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 26278 0.66 0.207888
Target:  5'- -uCGACCUGGcgggcgagcgcGuuGGUGUGGCGCCGGu -3'
miRNA:   3'- ccGCUGGGCC-----------CggCCGCGCCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 46297 0.66 0.207375
Target:  5'- cGGCGccCCCGGaccgaacGCCuGCGCGuGCAUCGAg -3'
miRNA:   3'- -CCGCu-GGGCC-------CGGcCGCGC-CGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 41042 0.67 0.202805
Target:  5'- cGCGGCCa-GGUCGGCGUGGCcgaCGGg -3'
miRNA:   3'- cCGCUGGgcCCGGCCGCGCCGug-GUU- -5'
18962 3' -66.6 NC_004683.1 + 24713 0.67 0.202805
Target:  5'- cGGCGGCCUGGgcGCCGGUGacgucgaGGUaggagaauGCCGGg -3'
miRNA:   3'- -CCGCUGGGCC--CGGCCGCg------CCG--------UGGUU- -5'
18962 3' -66.6 NC_004683.1 + 49455 0.67 0.202302
Target:  5'- gGGCGGuucguauCCgGGGCaGGUGCaggGGCACCGg -3'
miRNA:   3'- -CCGCU-------GGgCCCGgCCGCG---CCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 51114 0.67 0.197829
Target:  5'- uGGCGGggCGcGGCCGGCGCGaaGgGCCGc -3'
miRNA:   3'- -CCGCUggGC-CCGGCCGCGC--CgUGGUu -5'
18962 3' -66.6 NC_004683.1 + 3659 0.67 0.197829
Target:  5'- uGCGGCCCGGccGCCGcuggagaguGUGCGGCAggccCCGu -3'
miRNA:   3'- cCGCUGGGCC--CGGC---------CGCGCCGU----GGUu -5'
18962 3' -66.6 NC_004683.1 + 53676 0.67 0.197829
Target:  5'- cGGCGGCgaagaCGcGGCCGGCgguGCGGCcggcgucuGCCGc -3'
miRNA:   3'- -CCGCUGg----GC-CCGGCCG---CGCCG--------UGGUu -5'
18962 3' -66.6 NC_004683.1 + 18528 0.67 0.197829
Target:  5'- aGCGGgUCGGucaCGGCaGCGGCACCGc -3'
miRNA:   3'- cCGCUgGGCCcg-GCCG-CGCCGUGGUu -5'
18962 3' -66.6 NC_004683.1 + 12057 0.67 0.192961
Target:  5'- gGGCGAcagcCCCGGuGUgGGCaGCGGCGgUAGc -3'
miRNA:   3'- -CCGCU----GGGCC-CGgCCG-CGCCGUgGUU- -5'
18962 3' -66.6 NC_004683.1 + 55842 0.67 0.188198
Target:  5'- aGCGAUCUGG-UCGGCGUGGUcugcgGCCAu -3'
miRNA:   3'- cCGCUGGGCCcGGCCGCGCCG-----UGGUu -5'
18962 3' -66.6 NC_004683.1 + 18642 0.67 0.183539
Target:  5'- aGGUcGCCCGGuGUCGGCagGCugauGGCGCCGGu -3'
miRNA:   3'- -CCGcUGGGCC-CGGCCG--CG----CCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 55949 0.67 0.183539
Target:  5'- cGCGGCCCGuagacgaguuGGCCGGCGUacuuGGUGCg-- -3'
miRNA:   3'- cCGCUGGGC----------CCGGCCGCG----CCGUGguu -5'
18962 3' -66.6 NC_004683.1 + 49342 0.67 0.183539
Target:  5'- cGGCuGCCCGcaccacgacGGCCGGUGCcccuGCACCu- -3'
miRNA:   3'- -CCGcUGGGC---------CCGGCCGCGc---CGUGGuu -5'
18962 3' -66.6 NC_004683.1 + 24608 0.67 0.182161
Target:  5'- aGGCGACCCGGcauucuccuaccucGacgucaCCGGCGCccaGGcCGCCGAg -3'
miRNA:   3'- -CCGCUGGGCC--------------C------GGCCGCG---CC-GUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 27945 0.67 0.178982
Target:  5'- -aCGGCCCcugccucGCCGG-GCGGCGCCAAu -3'
miRNA:   3'- ccGCUGGGcc-----CGGCCgCGCCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 21224 0.67 0.178981
Target:  5'- cGCGGCCgggauguuCGGGaCCagcaGCGCGGCAUCAGc -3'
miRNA:   3'- cCGCUGG--------GCCC-GGc---CGCGCCGUGGUU- -5'
18962 3' -66.6 NC_004683.1 + 12305 0.67 0.178981
Target:  5'- gGGCGcucccGCCCcGGCgGGCGUGggaaucGCACCAGg -3'
miRNA:   3'- -CCGC-----UGGGcCCGgCCGCGC------CGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.