miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18962 5' -54.3 NC_004683.1 + 40293 0.67 0.75694
Target:  5'- uGCUCGGCGUCguagGCagcccgggcgaacuGCUGGAGCucGAUGg -3'
miRNA:   3'- -CGAGCUGCGGa---UG--------------UGGCCUUGu-CUGC- -5'
18962 5' -54.3 NC_004683.1 + 40999 0.67 0.755919
Target:  5'- aGCUCGGCGCCcgggucggauCCGGGGauguaguaAGGCGa -3'
miRNA:   3'- -CGAGCUGCGGaugu------GGCCUUg-------UCUGC- -5'
18962 5' -54.3 NC_004683.1 + 48313 0.67 0.749762
Target:  5'- gGCUCGGUGUCUcCACCGaGAACcagaAGugGg -3'
miRNA:   3'- -CGAGCUGCGGAuGUGGC-CUUG----UCugC- -5'
18962 5' -54.3 NC_004683.1 + 55772 0.67 0.749762
Target:  5'- --aCGACGCCaGCGuuGaGcAGCGGACGg -3'
miRNA:   3'- cgaGCUGCGGaUGUggC-C-UUGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 622 0.67 0.748731
Target:  5'- cCUCGGgGCCguaggucucgcugUACGCCGGGaaauuggcguacGCAGGCu -3'
miRNA:   3'- cGAGCUgCGG-------------AUGUGGCCU------------UGUCUGc -5'
18962 5' -54.3 NC_004683.1 + 21952 0.67 0.739406
Target:  5'- gGCgggCGGcCGCCgaguuCACCGGc-CAGGCGg -3'
miRNA:   3'- -CGa--GCU-GCGGau---GUGGCCuuGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 6818 0.67 0.739406
Target:  5'- cGCUCGAUGUgUcgACGCUGGAcCGGuCGc -3'
miRNA:   3'- -CGAGCUGCGgA--UGUGGCCUuGUCuGC- -5'
18962 5' -54.3 NC_004683.1 + 31986 0.67 0.728945
Target:  5'- aGCUCGcccCGCuggCUGCACCGGcccgAGCcGACGa -3'
miRNA:   3'- -CGAGCu--GCG---GAUGUGGCC----UUGuCUGC- -5'
18962 5' -54.3 NC_004683.1 + 13292 0.67 0.728945
Target:  5'- cGCUCGGCGCa---GCaGGGAUGGugGg -3'
miRNA:   3'- -CGAGCUGCGgaugUGgCCUUGUCugC- -5'
18962 5' -54.3 NC_004683.1 + 51558 0.67 0.718388
Target:  5'- cGCgUCGuaguACGCCUGCaaGCCGucGAGCAGAuCGg -3'
miRNA:   3'- -CG-AGC----UGCGGAUG--UGGC--CUUGUCU-GC- -5'
18962 5' -54.3 NC_004683.1 + 46632 0.67 0.718388
Target:  5'- cGCUCGAUGCCgGC-CCGGAucc-GCGc -3'
miRNA:   3'- -CGAGCUGCGGaUGuGGCCUugucUGC- -5'
18962 5' -54.3 NC_004683.1 + 26144 0.67 0.717327
Target:  5'- uGCUCGgucgacaggacgaACGC--GCGCCGGAACGGuGCa -3'
miRNA:   3'- -CGAGC-------------UGCGgaUGUGGCCUUGUC-UGc -5'
18962 5' -54.3 NC_004683.1 + 45833 0.68 0.707747
Target:  5'- aCUCGAacCGCCaGCGCCacaGAACAGAuCGg -3'
miRNA:   3'- cGAGCU--GCGGaUGUGGc--CUUGUCU-GC- -5'
18962 5' -54.3 NC_004683.1 + 31596 0.68 0.697033
Target:  5'- cGC-CGACaccaugucgGCCUACGCCuGGuccCAGGCGa -3'
miRNA:   3'- -CGaGCUG---------CGGAUGUGG-CCuu-GUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 26769 0.68 0.697033
Target:  5'- aCUCGACGUg-ACACCGGGGCGu--- -3'
miRNA:   3'- cGAGCUGCGgaUGUGGCCUUGUcugc -5'
18962 5' -54.3 NC_004683.1 + 28394 0.68 0.686257
Target:  5'- gGUUgGACGCa---GCCGGGgcGCGGGCGg -3'
miRNA:   3'- -CGAgCUGCGgaugUGGCCU--UGUCUGC- -5'
18962 5' -54.3 NC_004683.1 + 21090 0.68 0.67543
Target:  5'- uGUUCGGUGCUgucGCugCGGGACGGuCGg -3'
miRNA:   3'- -CGAGCUGCGGa--UGugGCCUUGUCuGC- -5'
18962 5' -54.3 NC_004683.1 + 23395 0.68 0.664562
Target:  5'- gGCUCGGgaugcCGCgCUGCAgCGGGAU-GACGa -3'
miRNA:   3'- -CGAGCU-----GCG-GAUGUgGCCUUGuCUGC- -5'
18962 5' -54.3 NC_004683.1 + 8156 0.69 0.652574
Target:  5'- cGCUCGGCGCCgAgGCCGcGAaggccgcggccaaGCAGGgGc -3'
miRNA:   3'- -CGAGCUGCGGaUgUGGC-CU-------------UGUCUgC- -5'
18962 5' -54.3 NC_004683.1 + 48465 0.69 0.648208
Target:  5'- gGCUCGGCGCUgaugaaucgcacgGCAgCCGGAgugucgaGCAGcGCGg -3'
miRNA:   3'- -CGAGCUGCGGa------------UGU-GGCCU-------UGUC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.