miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18963 3' -58.2 NC_004683.1 + 12060 0.66 0.625272
Target:  5'- aUCGGGcgaCAGcCCCGGuguGGGCa--GCGGCg -3'
miRNA:   3'- -GGCCCa--GUU-GGGCU---UCCGgagUGCCG- -5'
18963 3' -58.2 NC_004683.1 + 49746 0.66 0.625272
Target:  5'- aCuGGUCGGCCCacgcGucGGCCUUGCcaGGCu -3'
miRNA:   3'- gGcCCAGUUGGG----CuuCCGGAGUG--CCG- -5'
18963 3' -58.2 NC_004683.1 + 8158 0.66 0.625272
Target:  5'- cUCGGcGcCGagGCCgCGAAGGCC--GCGGCc -3'
miRNA:   3'- -GGCC-CaGU--UGG-GCUUCCGGagUGCCG- -5'
18963 3' -58.2 NC_004683.1 + 41038 0.66 0.625272
Target:  5'- gCCaGGUCGGCguggCCGAcGGGCa--ACGGCg -3'
miRNA:   3'- -GGcCCAGUUG----GGCU-UCCGgagUGCCG- -5'
18963 3' -58.2 NC_004683.1 + 12232 0.66 0.614666
Target:  5'- gCCGGGgCGggagcGCCCGgcGuGCCgaugCcCGGCg -3'
miRNA:   3'- -GGCCCaGU-----UGGGCuuC-CGGa---GuGCCG- -5'
18963 3' -58.2 NC_004683.1 + 8497 0.66 0.614666
Target:  5'- aCCGGaaGUC-AUCCGGcauuuacugguGGGCUggaUCGCGGCc -3'
miRNA:   3'- -GGCC--CAGuUGGGCU-----------UCCGG---AGUGCCG- -5'
18963 3' -58.2 NC_004683.1 + 51660 0.66 0.608308
Target:  5'- gCGacGGUCgAGCCCGucGAGGCCcUCguucugcgugcgcugGCGGCg -3'
miRNA:   3'- gGC--CCAG-UUGGGC--UUCCGG-AG---------------UGCCG- -5'
18963 3' -58.2 NC_004683.1 + 44946 0.66 0.604073
Target:  5'- aUCGGcacUCGGCCUccAGGCCgggccacCACGGCg -3'
miRNA:   3'- -GGCCc--AGUUGGGcuUCCGGa------GUGCCG- -5'
18963 3' -58.2 NC_004683.1 + 24062 0.66 0.604073
Target:  5'- uCUGGGagcagcuguUCGGCCCGcAGGCCa-AgGGCu -3'
miRNA:   3'- -GGCCC---------AGUUGGGCuUCCGGagUgCCG- -5'
18963 3' -58.2 NC_004683.1 + 9467 0.66 0.6009
Target:  5'- cCCGGGcCGAauggggugcuugucCUCGAGGGUCUUGucgucCGGCa -3'
miRNA:   3'- -GGCCCaGUU--------------GGGCUUCCGGAGU-----GCCG- -5'
18963 3' -58.2 NC_004683.1 + 23328 0.66 0.597728
Target:  5'- uUCGGGUCcACaaGAGGGCCaaccauuuucggugaUCAUGcGCc -3'
miRNA:   3'- -GGCCCAGuUGggCUUCCGG---------------AGUGC-CG- -5'
18963 3' -58.2 NC_004683.1 + 53491 0.66 0.593504
Target:  5'- aCgGGGUCcaaucACCCGggGGCg-CAuCGGg -3'
miRNA:   3'- -GgCCCAGu----UGGGCuuCCGgaGU-GCCg -5'
18963 3' -58.2 NC_004683.1 + 27520 0.66 0.593504
Target:  5'- gCC-GGUCGACCCugucguGGUUgCGCGGCa -3'
miRNA:   3'- -GGcCCAGUUGGGcuu---CCGGaGUGCCG- -5'
18963 3' -58.2 NC_004683.1 + 13611 0.66 0.593504
Target:  5'- gCGGGcCAGCUCGccGGCau--CGGCg -3'
miRNA:   3'- gGCCCaGUUGGGCuuCCGgaguGCCG- -5'
18963 3' -58.2 NC_004683.1 + 28772 0.66 0.593504
Target:  5'- aCGGGaUCugAAgCCGGcgcugggcAGGCCUcCGCGGUa -3'
miRNA:   3'- gGCCC-AG--UUgGGCU--------UCCGGA-GUGCCG- -5'
18963 3' -58.2 NC_004683.1 + 21835 0.66 0.587176
Target:  5'- gCCGcGGUCGuugaaccaccggucuGCCCGcGGGCUggguugaaUCcgGCGGCg -3'
miRNA:   3'- -GGC-CCAGU---------------UGGGCuUCCGG--------AG--UGCCG- -5'
18963 3' -58.2 NC_004683.1 + 25550 0.66 0.587176
Target:  5'- gCCuGGUCGccGCCCu--GGCCgcggucggcaacggCACGGCg -3'
miRNA:   3'- -GGcCCAGU--UGGGcuuCCGGa-------------GUGCCG- -5'
18963 3' -58.2 NC_004683.1 + 24448 0.66 0.582964
Target:  5'- aCCGGuGaucgCGACCgCGu-GGCCU-GCGGCg -3'
miRNA:   3'- -GGCC-Ca---GUUGG-GCuuCCGGAgUGCCG- -5'
18963 3' -58.2 NC_004683.1 + 49068 0.66 0.582964
Target:  5'- aUGGGUCAccGCgCCGcGGGUUUUcgacuACGGCg -3'
miRNA:   3'- gGCCCAGU--UG-GGCuUCCGGAG-----UGCCG- -5'
18963 3' -58.2 NC_004683.1 + 25046 0.66 0.582964
Target:  5'- gCCGGaUCGugUCGguGGCCU--CGGCg -3'
miRNA:   3'- -GGCCcAGUugGGCuuCCGGAguGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.