Results 41 - 45 of 45 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 18963 | 5' | -52.7 | NC_004683.1 | + | 24079 | 0.73 | 0.512513 |
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Target: 5'- cGGC-CGgGGCGGGCg-GUGGCGUGGu -3' miRNA: 3'- cCCGuGCgUUGCUUGagCACUGCACC- -5' |
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| 18963 | 5' | -52.7 | NC_004683.1 | + | 24771 | 0.73 | 0.523005 |
|
Target: 5'- cGGCGCGCGGCcauGGcCUCGaUGACGUcGGg -3' miRNA: 3'- cCCGUGCGUUG---CUuGAGC-ACUGCA-CC- -5' |
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| 18963 | 5' | -52.7 | NC_004683.1 | + | 10744 | 0.73 | 0.533578 |
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Target: 5'- cGGGCcaagACGCGGCGAACgaguUCGUcGGCG-GGu -3' miRNA: 3'- -CCCG----UGCGUUGCUUG----AGCA-CUGCaCC- -5' |
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| 18963 | 5' | -52.7 | NC_004683.1 | + | 37816 | 0.75 | 0.403988 |
|
Target: 5'- aGGCACGUggcuacucggcuGAUGGGCUUGUGACGcGGc -3' miRNA: 3'- cCCGUGCG------------UUGCUUGAGCACUGCaCC- -5' |
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| 18963 | 5' | -52.7 | NC_004683.1 | + | 52403 | 1.14 | 0.001076 |
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Target: 5'- aGGGCACGCAACGAACUCGUGACGUGGg -3' miRNA: 3'- -CCCGUGCGUUGCUUGAGCACUGCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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