Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18963 | 5' | -52.7 | NC_004683.1 | + | 52039 | 0.67 | 0.853826 |
Target: 5'- aGGCGCGuCAGCGGAUccacugCG-GGCGUGc -3' miRNA: 3'- cCCGUGC-GUUGCUUGa-----GCaCUGCACc -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 52248 | 0.67 | 0.827668 |
Target: 5'- cGGCagaucGCGCAACGugucacgcAGCUgCGUGAUGUGc -3' miRNA: 3'- cCCG-----UGCGUUGC--------UUGA-GCACUGCACc -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 52348 | 0.66 | 0.870125 |
Target: 5'- cGGuGUAgGCGuCGAGCUCGUG-CGccuUGGu -3' miRNA: 3'- -CC-CGUgCGUuGCUUGAGCACuGC---ACC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 52403 | 1.14 | 0.001076 |
Target: 5'- aGGGCACGCAACGAACUCGUGACGUGGg -3' miRNA: 3'- -CCCGUGCGUUGCUUGAGCACUGCACC- -5' |
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18963 | 5' | -52.7 | NC_004683.1 | + | 56249 | 0.72 | 0.587429 |
Target: 5'- uGGGCGCgGUGGCcAGCgcggCGUGAgCGUGGg -3' miRNA: 3'- -CCCGUG-CGUUGcUUGa---GCACU-GCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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