miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18963 5' -52.7 NC_004683.1 + 47972 0.67 0.822208
Target:  5'- gGGGCugGC--UGGACUCagcuucgugcagcccGUGACG-GGa -3'
miRNA:   3'- -CCCGugCGuuGCUUGAG---------------CACUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 3489 0.68 0.809193
Target:  5'- cGGCGgGCuACGAGC-CGgaaucgGugGUGGc -3'
miRNA:   3'- cCCGUgCGuUGCUUGaGCa-----CugCACC- -5'
18963 5' -52.7 NC_004683.1 + 41403 0.68 0.770112
Target:  5'- cGGCugGCGGCGuGGCUgGUGugGc-- -3'
miRNA:   3'- cCCGugCGUUGC-UUGAgCACugCacc -5'
18963 5' -52.7 NC_004683.1 + 34658 0.69 0.749679
Target:  5'- aGGGCACGUcAC--GCUCGUGACc--- -3'
miRNA:   3'- -CCCGUGCGuUGcuUGAGCACUGcacc -5'
18963 5' -52.7 NC_004683.1 + 318 0.69 0.739279
Target:  5'- cGGGCA-GCAGCGGcggcaucgcggcGCUCG-GA-GUGGg -3'
miRNA:   3'- -CCCGUgCGUUGCU------------UGAGCaCUgCACC- -5'
18963 5' -52.7 NC_004683.1 + 2351 0.69 0.728771
Target:  5'- cGGCAUcgGCuACGggUUCG-GugGUGGc -3'
miRNA:   3'- cCCGUG--CGuUGCuuGAGCaCugCACC- -5'
18963 5' -52.7 NC_004683.1 + 41562 0.69 0.728771
Target:  5'- aGGGCAgaaGaCAAUGAcGCUCGUGGCGa-- -3'
miRNA:   3'- -CCCGUg--C-GUUGCU-UGAGCACUGCacc -5'
18963 5' -52.7 NC_004683.1 + 24355 0.69 0.728771
Target:  5'- cGGGCccaugaGCGCGGCGuagGACUCGgcguaGGCGcGGg -3'
miRNA:   3'- -CCCG------UGCGUUGC---UUGAGCa----CUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 8656 0.7 0.711764
Target:  5'- uGGGCagcuGCGCGACGAccuguucgcucacaaGCUCGaaagcGGCGUGu -3'
miRNA:   3'- -CCCG----UGCGUUGCU---------------UGAGCa----CUGCACc -5'
18963 5' -52.7 NC_004683.1 + 24737 0.7 0.664104
Target:  5'- uGGUGCGCAgcaggcgcGCGAACUCGgcGGCcUGGg -3'
miRNA:   3'- cCCGUGCGU--------UGCUUGAGCa-CUGcACC- -5'
18963 5' -52.7 NC_004683.1 + 44494 0.7 0.653158
Target:  5'- -uGCGCGCGACGAcUUCGgUGGCGUa- -3'
miRNA:   3'- ccCGUGCGUUGCUuGAGC-ACUGCAcc -5'
18963 5' -52.7 NC_004683.1 + 22202 0.71 0.642194
Target:  5'- gGGGCGgGCGACGAGCcgccaccacucaUCGUGcagGCGUa- -3'
miRNA:   3'- -CCCGUgCGUUGCUUG------------AGCAC---UGCAcc -5'
18963 5' -52.7 NC_004683.1 + 9941 0.71 0.631221
Target:  5'- uGGCAcCGCGGCG-AC-CGUGACGagcgGGg -3'
miRNA:   3'- cCCGU-GCGUUGCuUGaGCACUGCa---CC- -5'
18963 5' -52.7 NC_004683.1 + 5729 0.71 0.620248
Target:  5'- cGGCgaacagcaGCGCGACGGuCUCGgUGACGuUGGc -3'
miRNA:   3'- cCCG--------UGCGUUGCUuGAGC-ACUGC-ACC- -5'
18963 5' -52.7 NC_004683.1 + 51714 0.71 0.609286
Target:  5'- cGGCAgCGCGaccGCGGGCUCGggGGCG-GGc -3'
miRNA:   3'- cCCGU-GCGU---UGCUUGAGCa-CUGCaCC- -5'
18963 5' -52.7 NC_004683.1 + 56249 0.72 0.587429
Target:  5'- uGGGCGCgGUGGCcAGCgcggCGUGAgCGUGGg -3'
miRNA:   3'- -CCCGUG-CGUUGcUUGa---GCACU-GCACC- -5'
18963 5' -52.7 NC_004683.1 + 33500 0.72 0.565721
Target:  5'- uGGUGCGguACGAGCUCaucguggacGUcGGCGUGGu -3'
miRNA:   3'- cCCGUGCguUGCUUGAG---------CA-CUGCACC- -5'
18963 5' -52.7 NC_004683.1 + 15299 0.72 0.554943
Target:  5'- cGGGCGCgGCAGCGAACUUGa-ACGUu- -3'
miRNA:   3'- -CCCGUG-CGUUGCUUGAGCacUGCAcc -5'
18963 5' -52.7 NC_004683.1 + 41629 0.73 0.533578
Target:  5'- cGGGCGCGCGGCGAACauggcacucUCGcaaUGGCGc-- -3'
miRNA:   3'- -CCCGUGCGUUGCUUG---------AGC---ACUGCacc -5'
18963 5' -52.7 NC_004683.1 + 10744 0.73 0.533578
Target:  5'- cGGGCcaagACGCGGCGAACgaguUCGUcGGCG-GGu -3'
miRNA:   3'- -CCCG----UGCGUUGCUUG----AGCA-CUGCaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.