Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 52594 | 1.05 | 0.000534 |
Target: 5'- gGUCAACCGGCCCGAGCCACCCGAGUAc -3' miRNA: 3'- -CAGUUGGCCGGGCUCGGUGGGCUCAU- -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 53390 | 0.66 | 0.41552 |
Target: 5'- aUCuACCuGCCCGAucccgaugcGCC-CCCGGGUGa -3' miRNA: 3'- cAGuUGGcCGGGCU---------CGGuGGGCUCAU- -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 17747 | 0.66 | 0.41552 |
Target: 5'- aUC-GCCGGCCUggucaaGGGCgACCCGGGc- -3' miRNA: 3'- cAGuUGGCCGGG------CUCGgUGGGCUCau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 44108 | 0.66 | 0.41552 |
Target: 5'- cGUCGaggugACCGGCgCUGAGCCGCUgUGGGa- -3' miRNA: 3'- -CAGU-----UGGCCG-GGCUCGGUGG-GCUCau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 23480 | 0.66 | 0.41552 |
Target: 5'- cUUAACUGGUCCGA-UCACCCGAu-- -3' miRNA: 3'- cAGUUGGCCGGGCUcGGUGGGCUcau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 18549 | 0.66 | 0.406464 |
Target: 5'- -cCAACCGGCgCCaucAGCCugCCGAc-- -3' miRNA: 3'- caGUUGGCCG-GGc--UCGGugGGCUcau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 9825 | 0.66 | 0.397533 |
Target: 5'- --gGAUCGGCgCCGAGCCgACUCGAa-- -3' miRNA: 3'- cagUUGGCCG-GGCUCGG-UGGGCUcau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 33955 | 0.67 | 0.388729 |
Target: 5'- aUCGGCCGGCaCCGGuccCCGCUCGcGGUGg -3' miRNA: 3'- cAGUUGGCCG-GGCUc--GGUGGGC-UCAU- -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 51932 | 0.67 | 0.380054 |
Target: 5'- gGUCGACgGGCgCGAGguacgcaCGCCCGcAGUGg -3' miRNA: 3'- -CAGUUGgCCGgGCUCg------GUGGGC-UCAU- -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 3656 | 0.7 | 0.22303 |
Target: 5'- -gCGugCGGCCCG-GCCGCCgcuggaGAGUGu -3' miRNA: 3'- caGUugGCCGGGCuCGGUGGg-----CUCAU- -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 43062 | 0.69 | 0.259478 |
Target: 5'- -aCAGCCGGCCCGAucuucGCCAauCCUGAc-- -3' miRNA: 3'- caGUUGGCCGGGCU-----CGGU--GGGCUcau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 12927 | 0.69 | 0.266005 |
Target: 5'- cGUCAACCuGCUCGAcgGCCGCCCcaccGGUGg -3' miRNA: 3'- -CAGUUGGcCGGGCU--CGGUGGGc---UCAU- -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 46298 | 0.68 | 0.307975 |
Target: 5'- uGUUGACCGG-CUGAcGCgGCCCGAGg- -3' miRNA: 3'- -CAGUUGGCCgGGCU-CGgUGGGCUCau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 6735 | 0.68 | 0.338662 |
Target: 5'- aGUCGA-CGGCCCGGGCgGCCgCGuGc- -3' miRNA: 3'- -CAGUUgGCCGGGCUCGgUGG-GCuCau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 13797 | 0.67 | 0.346672 |
Target: 5'- aGUCAGCCGggccagcagcaGCCCG-GCCAgCCGAu-- -3' miRNA: 3'- -CAGUUGGC-----------CGGGCuCGGUgGGCUcau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 32781 | 0.66 | 0.452941 |
Target: 5'- -cCAGCCGGCgCGAGCUGCCa----- -3' miRNA: 3'- caGUUGGCCGgGCUCGGUGGgcucau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 31968 | 0.72 | 0.181291 |
Target: 5'- ---cACCGGCCCGAGCCGacgaUGGGUAc -3' miRNA: 3'- caguUGGCCGGGCUCGGUgg--GCUCAU- -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 17841 | 0.7 | 0.240679 |
Target: 5'- gGUCcACgGGCCCGGGUCGCCCu---- -3' miRNA: 3'- -CAGuUGgCCGGGCUCGGUGGGcucau -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 32082 | 0.7 | 0.253082 |
Target: 5'- uGUCAGCCGcaccGCCUcAGCCGCCCGcgGGUu -3' miRNA: 3'- -CAGUUGGC----CGGGcUCGGUGGGC--UCAu -5' |
|||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 43990 | 0.69 | 0.286385 |
Target: 5'- aUCAGCUGGCaCuCGAccacGCCGCgCCGGGUGu -3' miRNA: 3'- cAGUUGGCCG-G-GCU----CGGUG-GGCUCAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home