Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18964 | 3' | -60.6 | NC_004683.1 | + | 12927 | 0.69 | 0.266005 |
Target: 5'- cGUCAACCuGCUCGAcgGCCGCCCcaccGGUGg -3' miRNA: 3'- -CAGUUGGcCGGGCU--CGGUGGGc---UCAU- -5' |
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18964 | 3' | -60.6 | NC_004683.1 | + | 43062 | 0.69 | 0.259478 |
Target: 5'- -aCAGCCGGCCCGAucuucGCCAauCCUGAc-- -3' miRNA: 3'- caGUUGGCCGGGCU-----CGGU--GGGCUcau -5' |
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18964 | 3' | -60.6 | NC_004683.1 | + | 32082 | 0.7 | 0.253082 |
Target: 5'- uGUCAGCCGcaccGCCUcAGCCGCCCGcgGGUu -3' miRNA: 3'- -CAGUUGGC----CGGGcUCGGUGGGC--UCAu -5' |
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18964 | 3' | -60.6 | NC_004683.1 | + | 17841 | 0.7 | 0.240679 |
Target: 5'- gGUCcACgGGCCCGGGUCGCCCu---- -3' miRNA: 3'- -CAGuUGgCCGGGCUCGGUGGGcucau -5' |
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18964 | 3' | -60.6 | NC_004683.1 | + | 3656 | 0.7 | 0.22303 |
Target: 5'- -gCGugCGGCCCG-GCCGCCgcuggaGAGUGu -3' miRNA: 3'- caGUugGCCGGGCuCGGUGGg-----CUCAU- -5' |
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18964 | 3' | -60.6 | NC_004683.1 | + | 31968 | 0.72 | 0.181291 |
Target: 5'- ---cACCGGCCCGAGCCGacgaUGGGUAc -3' miRNA: 3'- caguUGGCCGGGCUCGGUgg--GCUCAU- -5' |
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18964 | 3' | -60.6 | NC_004683.1 | + | 52313 | 0.72 | 0.171996 |
Target: 5'- ---cGCCGGCCCGGGUCGCC-GAGg- -3' miRNA: 3'- caguUGGCCGGGCUCGGUGGgCUCau -5' |
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18964 | 3' | -60.6 | NC_004683.1 | + | 52594 | 1.05 | 0.000534 |
Target: 5'- gGUCAACCGGCCCGAGCCACCCGAGUAc -3' miRNA: 3'- -CAGUUGGCCGGGCUCGGUGGGCUCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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