Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18964 | 5' | -54.9 | NC_004683.1 | + | 5236 | 0.69 | 0.573497 |
Target: 5'- aGUGCCuGGCgACGUcgUCGCCGGCGu- -3' miRNA: 3'- gCACGG-UCG-UGCAcaAGUGGCUGCuc -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 5347 | 0.71 | 0.458993 |
Target: 5'- gCGUGCCaucuucgaccaGGCGCGcagGUaCGCCGGCGAc -3' miRNA: 3'- -GCACGG-----------UCGUGCa--CAaGUGGCUGCUc -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 5457 | 0.66 | 0.735883 |
Target: 5'- --cGCCAGguCGUcgcCACCGGCGAu -3' miRNA: 3'- gcaCGGUCguGCAcaaGUGGCUGCUc -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 6364 | 0.66 | 0.756583 |
Target: 5'- aCGUGCCc-CGCGUGgugCGCCccGGCGAc -3' miRNA: 3'- -GCACGGucGUGCACaa-GUGG--CUGCUc -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 6609 | 0.67 | 0.704089 |
Target: 5'- --cGCCAagguGCGCGgccaGUUCGCCGACa-- -3' miRNA: 3'- gcaCGGU----CGUGCa---CAAGUGGCUGcuc -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 6691 | 0.71 | 0.458993 |
Target: 5'- uGUgGCUGGCACGUGUcgcccgugaUCAUCGAUGAc -3' miRNA: 3'- gCA-CGGUCGUGCACA---------AGUGGCUGCUc -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 8180 | 0.66 | 0.735883 |
Target: 5'- gGUGCCAGCcuCGggGUcgucggCGCCGuCGAGc -3' miRNA: 3'- gCACGGUCGu-GCa-CAa-----GUGGCuGCUC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 9310 | 0.68 | 0.627974 |
Target: 5'- cCG-GCCAGCGCGUcccaggcggGacCGCCGAUGAa -3' miRNA: 3'- -GCaCGGUCGUGCA---------CaaGUGGCUGCUc -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 20047 | 0.77 | 0.194975 |
Target: 5'- gGUGauaCGGCGCGguUGggCACCGACGAGg -3' miRNA: 3'- gCACg--GUCGUGC--ACaaGUGGCUGCUC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 22789 | 0.66 | 0.756583 |
Target: 5'- gGUGCCGacGCGCGUcga-ACCGGCGuAGa -3' miRNA: 3'- gCACGGU--CGUGCAcaagUGGCUGC-UC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 23395 | 0.66 | 0.76675 |
Target: 5'- --cGCCcGCgGCGg---CACCGACGAGg -3' miRNA: 3'- gcaCGGuCG-UGCacaaGUGGCUGCUC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 24310 | 0.66 | 0.776779 |
Target: 5'- cCGcUGCCAGUGCGUGacgucaUCACCccgggcgucgGAUGAGc -3' miRNA: 3'- -GC-ACGGUCGUGCACa-----AGUGG----------CUGCUC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 24752 | 0.66 | 0.74629 |
Target: 5'- gGUGuCCGGCuacuCGcaGUcCGCCGACGGGu -3' miRNA: 3'- gCAC-GGUCGu---GCa-CAaGUGGCUGCUC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 31531 | 0.71 | 0.478988 |
Target: 5'- gGUGUCGGCGuCGgccaCGCCGGCGAGc -3' miRNA: 3'- gCACGGUCGU-GCacaaGUGGCUGCUC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 40470 | 0.81 | 0.112751 |
Target: 5'- aGUGUCGGCGCGUGcaCACCGcCGAGg -3' miRNA: 3'- gCACGGUCGUGCACaaGUGGCuGCUC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 41041 | 0.67 | 0.714771 |
Target: 5'- gCG-GCCAGguCGgcgUgGCCGACGGGc -3' miRNA: 3'- -GCaCGGUCguGCacaAgUGGCUGCUC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 44131 | 0.72 | 0.411054 |
Target: 5'- --cGCUguGGgACGUGUUCaccGCCGACGAGa -3' miRNA: 3'- gcaCGG--UCgUGCACAAG---UGGCUGCUC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 44542 | 0.66 | 0.76675 |
Target: 5'- --gGCCAucuGCACGUcGggCGCCGGCGcGg -3' miRNA: 3'- gcaCGGU---CGUGCA-CaaGUGGCUGCuC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 46692 | 0.68 | 0.617034 |
Target: 5'- aCG-GgCGGUACGUGgcgCACCGACGcGa -3' miRNA: 3'- -GCaCgGUCGUGCACaa-GUGGCUGCuC- -5' |
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18964 | 5' | -54.9 | NC_004683.1 | + | 47475 | 0.69 | 0.595204 |
Target: 5'- aCGcGUCGuCACGUGUggGCCGugGAGg -3' miRNA: 3'- -GCaCGGUcGUGCACAagUGGCugCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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