Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18965 | 3' | -60.9 | NC_004683.1 | + | 52783 | 1.07 | 0.000364 |
Target: 5'- gCAAGAGGCGCUGCUCGCCGAGGCCGAc -3' miRNA: 3'- -GUUCUCCGCGACGAGCGGCUCCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 4305 | 0.78 | 0.057694 |
Target: 5'- cCGAGcAGcGCaaGUUGCUCGCCGAGGCCGu -3' miRNA: 3'- -GUUC-UC-CG--CGACGAGCGGCUCCGGCu -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 4951 | 0.75 | 0.109207 |
Target: 5'- -cAGcGGCGCaUGCgCGUCGAGGCCGGu -3' miRNA: 3'- guUCuCCGCG-ACGaGCGGCUCCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 26239 | 0.74 | 0.121763 |
Target: 5'- gAAGAGGuCGagcgcgacaauCUGCUCGCCGAGGCa-- -3' miRNA: 3'- gUUCUCC-GC-----------GACGAGCGGCUCCGgcu -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 46013 | 0.72 | 0.167869 |
Target: 5'- --cGAGGUGCUGCccgaCGCgGcGGCCGAg -3' miRNA: 3'- guuCUCCGCGACGa---GCGgCuCCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 24089 | 0.71 | 0.206246 |
Target: 5'- cCAAGGGcuggcccGCGCUGCUCGgCaAGGUCGAc -3' miRNA: 3'- -GUUCUC-------CGCGACGAGCgGcUCCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 42540 | 0.71 | 0.206778 |
Target: 5'- aCGAGuGGCGCcGCgcgaCGCacaccaugagCGAGGCCGAg -3' miRNA: 3'- -GUUCuCCGCGaCGa---GCG----------GCUCCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 1758 | 0.71 | 0.212156 |
Target: 5'- -cGGccGCGCUGCgaUCGUCGAGGCCc- -3' miRNA: 3'- guUCucCGCGACG--AGCGGCUCCGGcu -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 51281 | 0.71 | 0.212156 |
Target: 5'- -cAGGGGCGCUcgcGCUCGUgCGGGGCgCGu -3' miRNA: 3'- guUCUCCGCGA---CGAGCG-GCUCCG-GCu -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 39153 | 0.7 | 0.217654 |
Target: 5'- uCGAGaAGGaCGCaccGCUCGUCGccaAGGCCGAg -3' miRNA: 3'- -GUUC-UCC-GCGa--CGAGCGGC---UCCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 40076 | 0.7 | 0.234884 |
Target: 5'- --cGAcGCGCUGUUCGCCcGGGCCc- -3' miRNA: 3'- guuCUcCGCGACGAGCGGcUCCGGcu -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 8952 | 0.7 | 0.234884 |
Target: 5'- -uGGuGGaGCUGCcCGgCGAGGCCGAc -3' miRNA: 3'- guUCuCCgCGACGaGCgGCUCCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 13408 | 0.69 | 0.266129 |
Target: 5'- --cGAGGgGgUGgUCGCCGGuguGGCCGGa -3' miRNA: 3'- guuCUCCgCgACgAGCGGCU---CCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 40483 | 0.69 | 0.279539 |
Target: 5'- -uGGA-GCGCggcaggucgaGCUCGUCGAGGUCGAg -3' miRNA: 3'- guUCUcCGCGa---------CGAGCGGCUCCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 45301 | 0.68 | 0.293481 |
Target: 5'- -uAGAGGCGCUGacgauCUCGgCGAGcGCgCGGu -3' miRNA: 3'- guUCUCCGCGAC-----GAGCgGCUC-CG-GCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 10191 | 0.68 | 0.322978 |
Target: 5'- --cGAGGCGCgugaGCggGCCGAGgaacaggccGCCGAa -3' miRNA: 3'- guuCUCCGCGa---CGagCGGCUC---------CGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 30511 | 0.68 | 0.33069 |
Target: 5'- --cGAGGUGgaUG-UCGCUGAGGCUGAu -3' miRNA: 3'- guuCUCCGCg-ACgAGCGGCUCCGGCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 10594 | 0.68 | 0.33069 |
Target: 5'- uCGAGaAGGCGC-GCcgCGCUGAGGUgCGGg -3' miRNA: 3'- -GUUC-UCCGCGaCGa-GCGGCUCCG-GCU- -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 10424 | 0.67 | 0.362879 |
Target: 5'- --uGGGGCGCgGgaUGCCGAccaGGCCGu -3' miRNA: 3'- guuCUCCGCGaCgaGCGGCU---CCGGCu -5' |
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18965 | 3' | -60.9 | NC_004683.1 | + | 51117 | 0.67 | 0.37977 |
Target: 5'- --cGGGGCGCggccgGCgcgaaggGCCGcaAGGCCGAc -3' miRNA: 3'- guuCUCCGCGa----CGag-----CGGC--UCCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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