miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18965 3' -60.9 NC_004683.1 + 13408 0.69 0.266129
Target:  5'- --cGAGGgGgUGgUCGCCGGuguGGCCGGa -3'
miRNA:   3'- guuCUCCgCgACgAGCGGCU---CCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 8952 0.7 0.234884
Target:  5'- -uGGuGGaGCUGCcCGgCGAGGCCGAc -3'
miRNA:   3'- guUCuCCgCGACGaGCgGCUCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 40076 0.7 0.234884
Target:  5'- --cGAcGCGCUGUUCGCCcGGGCCc- -3'
miRNA:   3'- guuCUcCGCGACGAGCGGcUCCGGcu -5'
18965 3' -60.9 NC_004683.1 + 39153 0.7 0.217654
Target:  5'- uCGAGaAGGaCGCaccGCUCGUCGccaAGGCCGAg -3'
miRNA:   3'- -GUUC-UCC-GCGa--CGAGCGGC---UCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 51281 0.71 0.212156
Target:  5'- -cAGGGGCGCUcgcGCUCGUgCGGGGCgCGu -3'
miRNA:   3'- guUCUCCGCGA---CGAGCG-GCUCCG-GCu -5'
18965 3' -60.9 NC_004683.1 + 1758 0.71 0.212156
Target:  5'- -cGGccGCGCUGCgaUCGUCGAGGCCc- -3'
miRNA:   3'- guUCucCGCGACG--AGCGGCUCCGGcu -5'
18965 3' -60.9 NC_004683.1 + 42540 0.71 0.206778
Target:  5'- aCGAGuGGCGCcGCgcgaCGCacaccaugagCGAGGCCGAg -3'
miRNA:   3'- -GUUCuCCGCGaCGa---GCG----------GCUCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 24089 0.71 0.206246
Target:  5'- cCAAGGGcuggcccGCGCUGCUCGgCaAGGUCGAc -3'
miRNA:   3'- -GUUCUC-------CGCGACGAGCgGcUCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 46013 0.72 0.167869
Target:  5'- --cGAGGUGCUGCccgaCGCgGcGGCCGAg -3'
miRNA:   3'- guuCUCCGCGACGa---GCGgCuCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 26239 0.74 0.121763
Target:  5'- gAAGAGGuCGagcgcgacaauCUGCUCGCCGAGGCa-- -3'
miRNA:   3'- gUUCUCC-GC-----------GACGAGCGGCUCCGgcu -5'
18965 3' -60.9 NC_004683.1 + 4951 0.75 0.109207
Target:  5'- -cAGcGGCGCaUGCgCGUCGAGGCCGGu -3'
miRNA:   3'- guUCuCCGCG-ACGaGCGGCUCCGGCU- -5'
18965 3' -60.9 NC_004683.1 + 4305 0.78 0.057694
Target:  5'- cCGAGcAGcGCaaGUUGCUCGCCGAGGCCGu -3'
miRNA:   3'- -GUUC-UC-CG--CGACGAGCGGCUCCGGCu -5'
18965 3' -60.9 NC_004683.1 + 52783 1.07 0.000364
Target:  5'- gCAAGAGGCGCUGCUCGCCGAGGCCGAc -3'
miRNA:   3'- -GUUCUCCGCGACGAGCGGCUCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.