Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18966 | 3' | -57.9 | NC_004683.1 | + | 2276 | 0.66 | 0.598993 |
Target: 5'- cGCGGCAcaggcggUCGCGGccaGU-AGUgcACCCGCGGc -3' miRNA: 3'- -UGCCGU-------AGUGCC---CAcUCA--UGGGCGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 28342 | 0.66 | 0.568079 |
Target: 5'- gACGGCcgCGaGGGUGAGgaugcagACCagcaCGCGGa -3' miRNA: 3'- -UGCCGuaGUgCCCACUCa------UGG----GCGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 46988 | 0.66 | 0.567019 |
Target: 5'- uCGGCAgcgccUCGCGGGUGGgcaccacucccccGUugCCGUa- -3' miRNA: 3'- uGCCGU-----AGUGCCCACU-------------CAugGGCGcu -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 19142 | 0.66 | 0.578701 |
Target: 5'- gUGGCGUCGUGGGUGAGccgucACCCucaaCGAu -3' miRNA: 3'- uGCCGUAGUGCCCACUCa----UGGGc---GCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 18216 | 0.66 | 0.610789 |
Target: 5'- cCGGCcgcCACGGcGUGcgguaGGUGCCgGCGGc -3' miRNA: 3'- uGCCGua-GUGCC-CAC-----UCAUGGgCGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 6084 | 0.66 | 0.600064 |
Target: 5'- uCGGCAUgACGGucGAGUucauCCCGCa- -3' miRNA: 3'- uGCCGUAgUGCCcaCUCAu---GGGCGcu -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 33341 | 0.66 | 0.582962 |
Target: 5'- gGCGagcGCGUCGCGGGccucuuucucggugGGGUACCgucUGCGAa -3' miRNA: 3'- -UGC---CGUAGUGCCCa-------------CUCAUGG---GCGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 24412 | 0.66 | 0.608642 |
Target: 5'- uCGGCGuugcaucUCGCGGGUGAacucggcgucgcuGUugCCGUa- -3' miRNA: 3'- uGCCGU-------AGUGCCCACU-------------CAugGGCGcu -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 40524 | 0.67 | 0.505629 |
Target: 5'- uGCGGUgcaugcCACGGGcGGGUGCCCacacuGCGGc -3' miRNA: 3'- -UGCCGua----GUGCCCaCUCAUGGG-----CGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 49273 | 0.67 | 0.557506 |
Target: 5'- cGCGGguUagccagCACGaGGUG-GUACCCGCc- -3' miRNA: 3'- -UGCCguA------GUGC-CCACuCAUGGGCGcu -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 5827 | 0.67 | 0.54699 |
Target: 5'- gGCGGCGgugcccgcgaGCGcGGUGAcGaUGCCCGUGGg -3' miRNA: 3'- -UGCCGUag--------UGC-CCACU-C-AUGGGCGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 54505 | 0.67 | 0.503595 |
Target: 5'- uCGGCGUUACcGGUGAGcacgucgaccagGCCCGCc- -3' miRNA: 3'- uGCCGUAGUGcCCACUCa-----------UGGGCGcu -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 19420 | 0.67 | 0.515852 |
Target: 5'- -aGGCGUUgaGCGGGccccacgGuuccGUGCCCGCGGg -3' miRNA: 3'- ugCCGUAG--UGCCCa------Cu---CAUGGGCGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 49070 | 0.68 | 0.446309 |
Target: 5'- gGCGGgAUCGCGGcGg----GCCCGCGGu -3' miRNA: 3'- -UGCCgUAGUGCC-CacucaUGGGCGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 56443 | 0.68 | 0.485453 |
Target: 5'- gAUGGCcuuggugcuGUCGUGGGUGAGcaGCCCGuCGAg -3' miRNA: 3'- -UGCCG---------UAGUGCCCACUCa-UGGGC-GCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 40855 | 0.69 | 0.427408 |
Target: 5'- gUGuGCAUCGCGGGcGAGUACgggcaGCGAc -3' miRNA: 3'- uGC-CGUAGUGCCCaCUCAUGgg---CGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 45593 | 0.69 | 0.399967 |
Target: 5'- gACGGCcugGUCGacgccgGGGUG-GUGCCCGaCGAc -3' miRNA: 3'- -UGCCG---UAGUg-----CCCACuCAUGGGC-GCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 53868 | 0.69 | 0.418137 |
Target: 5'- uUGGuCAUCGCGGGUacucACCCGUGAu -3' miRNA: 3'- uGCC-GUAGUGCCCAcucaUGGGCGCU- -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 13377 | 0.7 | 0.365179 |
Target: 5'- gGCGGCAcgcugccauUCAUGGGccaGGGUgGCCCGCa- -3' miRNA: 3'- -UGCCGU---------AGUGCCCa--CUCA-UGGGCGcu -5' |
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18966 | 3' | -57.9 | NC_004683.1 | + | 2349 | 0.71 | 0.332537 |
Target: 5'- aACGGCAUCggcuACGGGUucgguGGUGgcguCCCGCGGa -3' miRNA: 3'- -UGCCGUAG----UGCCCAc----UCAU----GGGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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