Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18966 | 5' | -48.7 | NC_004683.1 | + | 4177 | 0.71 | 0.812905 |
Target: 5'- cGUCGCGGAUgaUCuugCCGUGGGGGa- -3' miRNA: 3'- aCAGCGUCUAa-AGua-GGCGCUCUUag -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 8585 | 0.67 | 0.942697 |
Target: 5'- uUGUCGaCGG---UCGUguagccaccagCCGCGGGAGUCg -3' miRNA: 3'- -ACAGC-GUCuaaAGUA-----------GGCGCUCUUAG- -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 10769 | 0.66 | 0.95972 |
Target: 5'- cGUCgGCGGGUUcgcaggcUCGUCCGCGcuucugcggcucGGAUCa -3' miRNA: 3'- aCAG-CGUCUAA-------AGUAGGCGCu-----------CUUAG- -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 26254 | 0.68 | 0.919678 |
Target: 5'- gUGUgGCGccggUUCAUgaUCGCGAGGAUCa -3' miRNA: 3'- -ACAgCGUcua-AAGUA--GGCGCUCUUAG- -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 26931 | 0.69 | 0.876122 |
Target: 5'- cGUCGguGAgUUCcUCCGCaggcgcgaGAGggUCc -3' miRNA: 3'- aCAGCguCUaAAGuAGGCG--------CUCuuAG- -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 38521 | 0.66 | 0.968337 |
Target: 5'- -aUCGCGGAgaUCGUuCCGCGGucuGUCu -3' miRNA: 3'- acAGCGUCUaaAGUA-GGCGCUcu-UAG- -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 39955 | 0.66 | 0.971641 |
Target: 5'- --cCGCAGcg--CAUCCGCcgucucGGGAAUCg -3' miRNA: 3'- acaGCGUCuaaaGUAGGCG------CUCUUAG- -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 41713 | 0.66 | 0.968337 |
Target: 5'- -aUCGCGGuggUCAccucgCCGCGAGAc-- -3' miRNA: 3'- acAGCGUCuaaAGUa----GGCGCUCUuag -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 48701 | 0.74 | 0.648746 |
Target: 5'- gGUCGCGGA----GUCCGCGGGcccAGUCg -3' miRNA: 3'- aCAGCGUCUaaagUAGGCGCUC---UUAG- -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 50834 | 0.67 | 0.937398 |
Target: 5'- gUGUCGC-GAg--CcgUCGCGAGAccGUCg -3' miRNA: 3'- -ACAGCGuCUaaaGuaGGCGCUCU--UAG- -5' |
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18966 | 5' | -48.7 | NC_004683.1 | + | 53818 | 1.11 | 0.00377 |
Target: 5'- cUGUCGCAGAUUUCAUCCGCGAGAAUCu -3' miRNA: 3'- -ACAGCGUCUAAAGUAGGCGCUCUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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