Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18967 | 3' | -50.5 | NC_004683.1 | + | 15556 | 0.68 | 0.874363 |
Target: 5'- aGGUUGAgccguacuacgucaaGGUGGcgAUCGACGGCGGc -3' miRNA: 3'- aCUAGCU---------------UCACUagUAGCUGCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 41831 | 0.68 | 0.874363 |
Target: 5'- gGuAUCGAcgcgcgGGUaGGUCAUCGgcucgggcaggucucGCGGCGAGg -3' miRNA: 3'- aC-UAGCU------UCA-CUAGUAGC---------------UGCCGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 7939 | 0.68 | 0.871148 |
Target: 5'- uUGGUCGggGUG-UCGggucCGAcaCGGCGGa -3' miRNA: 3'- -ACUAGCuuCACuAGUa---GCU--GCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 25163 | 0.68 | 0.871148 |
Target: 5'- cUGcUCGGcucGGUCAUCGGCGGCGuGc -3' miRNA: 3'- -ACuAGCUucaCUAGUAGCUGCCGCuC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 21549 | 0.68 | 0.86293 |
Target: 5'- -cAUCGAcGUGAUCcugcugggCGGCGGCGGu -3' miRNA: 3'- acUAGCUuCACUAGua------GCUGCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 45927 | 0.68 | 0.86293 |
Target: 5'- -cGUCGggGUGAuUCGuguugugcgucUCGACGGCcAGg -3' miRNA: 3'- acUAGCuuCACU-AGU-----------AGCUGCCGcUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 34576 | 0.68 | 0.86293 |
Target: 5'- ---cCGGAGuUGAggcUGUCGACGGUGAGa -3' miRNA: 3'- acuaGCUUC-ACUa--GUAGCUGCCGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 3165 | 0.68 | 0.86293 |
Target: 5'- aGAUCGAcuucaagaacGUGcgCggCGGCGGUGAGa -3' miRNA: 3'- aCUAGCUu---------CACuaGuaGCUGCCGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 44672 | 0.68 | 0.854459 |
Target: 5'- -cGUCGAAcGUGAg-GUCGGCGGCGc- -3' miRNA: 3'- acUAGCUU-CACUagUAGCUGCCGCuc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 49526 | 0.69 | 0.835887 |
Target: 5'- aGGUCGGauggaacGGUG-UCAgCGGCGGCGGa -3' miRNA: 3'- aCUAGCU-------UCACuAGUaGCUGCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 666 | 0.69 | 0.827619 |
Target: 5'- cGuUCGAGuucGUGGUCAUCG-CGGCGcGg -3' miRNA: 3'- aCuAGCUU---CACUAGUAGCuGCCGCuC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 2719 | 0.69 | 0.812494 |
Target: 5'- gGGUCGAcGUGGUgGUCGaggaacggauggugcGCGGCGGc -3' miRNA: 3'- aCUAGCUuCACUAgUAGC---------------UGCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 22918 | 0.7 | 0.798841 |
Target: 5'- -uGUCGcuGGUGAUCAaCGACGGCa-- -3' miRNA: 3'- acUAGCu-UCACUAGUaGCUGCCGcuc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 41711 | 0.7 | 0.798841 |
Target: 5'- aGAUCGcGGUGGUCAccUCG-CcGCGAGa -3' miRNA: 3'- aCUAGCuUCACUAGU--AGCuGcCGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 5844 | 0.7 | 0.778723 |
Target: 5'- gUGAcUGGAGcGAUC-UCGGCGGCGGu -3' miRNA: 3'- -ACUaGCUUCaCUAGuAGCUGCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 8078 | 0.72 | 0.681725 |
Target: 5'- ---gUGAGGUGAcccgCAUCGACGGCGc- -3' miRNA: 3'- acuaGCUUCACUa---GUAGCUGCCGCuc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 33884 | 0.75 | 0.493407 |
Target: 5'- cUGGUCGAAuGUGAUCAgccucCGuGCGGCGAu -3' miRNA: 3'- -ACUAGCUU-CACUAGUa----GC-UGCCGCUc -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 48557 | 0.87 | 0.099604 |
Target: 5'- -cGUCGGgcugcacugGGUGAUCGUCGGCGGCGAGa -3' miRNA: 3'- acUAGCU---------UCACUAGUAGCUGCCGCUC- -5' |
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18967 | 3' | -50.5 | NC_004683.1 | + | 54519 | 1.09 | 0.003713 |
Target: 5'- gUGAUCGAAGUGAUCAUCGACGGCGAGc -3' miRNA: 3'- -ACUAGCUUCACUAGUAGCUGCCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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