miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18967 5' -55.2 NC_004683.1 + 54553 1.11 0.00093
Target:  5'- cGCCCGCGACGUCACACGGUCACUUCAu -3'
miRNA:   3'- -CGGGCGCUGCAGUGUGCCAGUGAAGU- -5'
18967 5' -55.2 NC_004683.1 + 40926 0.79 0.143798
Target:  5'- cGCCCGCGAUG-CACAcuCGG-CACUUCGa -3'
miRNA:   3'- -CGGGCGCUGCaGUGU--GCCaGUGAAGU- -5'
18967 5' -55.2 NC_004683.1 + 257 0.73 0.371119
Target:  5'- uGCCCGCGGCGggGC-UGGUCGCgacgguggUCAa -3'
miRNA:   3'- -CGGGCGCUGCagUGuGCCAGUGa-------AGU- -5'
18967 5' -55.2 NC_004683.1 + 19380 0.71 0.4839
Target:  5'- uGCCCGcCGACGUCACucacGUCGCgaUCGg -3'
miRNA:   3'- -CGGGC-GCUGCAGUGugc-CAGUGa-AGU- -5'
18967 5' -55.2 NC_004683.1 + 34973 0.7 0.504291
Target:  5'- aGCCCGUGccgcACGUCAgGCGcUCAUUUCc -3'
miRNA:   3'- -CGGGCGC----UGCAGUgUGCcAGUGAAGu -5'
18967 5' -55.2 NC_004683.1 + 47907 0.69 0.545055
Target:  5'- uGCCCGUGugGUCGCucauCGGUUcuccuguGCUg-- -3'
miRNA:   3'- -CGGGCGCugCAGUGu---GCCAG-------UGAagu -5'
18967 5' -55.2 NC_004683.1 + 47312 0.69 0.577118
Target:  5'- aGCCCGCGAUgGUCGaGCaGGUCGCcguggugUUCAc -3'
miRNA:   3'- -CGGGCGCUG-CAGUgUG-CCAGUG-------AAGU- -5'
18967 5' -55.2 NC_004683.1 + 48326 0.69 0.588986
Target:  5'- cGCCgGCGGCGUCGCucauuuCGG-CGCg--- -3'
miRNA:   3'- -CGGgCGCUGCAGUGu-----GCCaGUGaagu -5'
18967 5' -55.2 NC_004683.1 + 42637 0.69 0.599811
Target:  5'- cGCCCGCGACGagAUcgGCGGcCGCc--- -3'
miRNA:   3'- -CGGGCGCUGCagUG--UGCCaGUGaagu -5'
18967 5' -55.2 NC_004683.1 + 24336 0.69 0.60415
Target:  5'- aCCCGCGAgaugcaacgccgacuCGUCGCcgcaggccacGCGGUCGCgaUCAc -3'
miRNA:   3'- cGGGCGCU---------------GCAGUG----------UGCCAGUGa-AGU- -5'
18967 5' -55.2 NC_004683.1 + 33834 0.68 0.610664
Target:  5'- uGCuCUGCGAgcUCGCGCGGUCGCc--- -3'
miRNA:   3'- -CG-GGCGCUgcAGUGUGCCAGUGaagu -5'
18967 5' -55.2 NC_004683.1 + 47747 0.68 0.632416
Target:  5'- cGCCaGCGACGUCACACG--CACcgUUCc -3'
miRNA:   3'- -CGGgCGCUGCAGUGUGCcaGUG--AAGu -5'
18967 5' -55.2 NC_004683.1 + 33415 0.68 0.643296
Target:  5'- gGCCCGCGACG-CGCucgcccagauccGCGGcCAggUCGc -3'
miRNA:   3'- -CGGGCGCUGCaGUG------------UGCCaGUgaAGU- -5'
18967 5' -55.2 NC_004683.1 + 6619 0.68 0.654167
Target:  5'- cGCCUGUGugGUUgcggGCGCGG--GCUUCu -3'
miRNA:   3'- -CGGGCGCugCAG----UGUGCCagUGAAGu -5'
18967 5' -55.2 NC_004683.1 + 44372 0.67 0.665017
Target:  5'- uGCCCggGCGAuCGUCgGCGCGGaUCGCcgcgUCGa -3'
miRNA:   3'- -CGGG--CGCU-GCAG-UGUGCC-AGUGa---AGU- -5'
18967 5' -55.2 NC_004683.1 + 5801 0.67 0.665017
Target:  5'- cGCCCugGCgGAUGUCuACGCGGUCuACgagCAg -3'
miRNA:   3'- -CGGG--CG-CUGCAG-UGUGCCAG-UGaa-GU- -5'
18967 5' -55.2 NC_004683.1 + 53212 0.67 0.697345
Target:  5'- --gCGCGaACGUCgACAUGGUCACcUCc -3'
miRNA:   3'- cggGCGC-UGCAG-UGUGCCAGUGaAGu -5'
18967 5' -55.2 NC_004683.1 + 49274 0.67 0.697345
Target:  5'- uGCCCGaCGACGUC--GCGG-CACa--- -3'
miRNA:   3'- -CGGGC-GCUGCAGugUGCCaGUGaagu -5'
18967 5' -55.2 NC_004683.1 + 42702 0.67 0.708012
Target:  5'- -gUCGCgGGCGUCGuCGCGGUCGCc--- -3'
miRNA:   3'- cgGGCG-CUGCAGU-GUGCCAGUGaagu -5'
18967 5' -55.2 NC_004683.1 + 4224 0.66 0.729117
Target:  5'- gGCCgGUGACGUgGC-CGGccuacgccgaCACUUCAg -3'
miRNA:   3'- -CGGgCGCUGCAgUGuGCCa---------GUGAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.