miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18968 3' -53.5 NC_004683.1 + 40125 0.66 0.824494
Target:  5'- -gCGGCCGcGACcAUCGCCAaucuGCAUgCGa -3'
miRNA:   3'- cgGCUGGC-CUGcUAGCGGU----UGUAaGC- -5'
18968 3' -53.5 NC_004683.1 + 23086 0.66 0.824494
Target:  5'- aCCGGCgcgcucucgUGGGCGuUCGCCAGCGgcagCGu -3'
miRNA:   3'- cGGCUG---------GCCUGCuAGCGGUUGUaa--GC- -5'
18968 3' -53.5 NC_004683.1 + 6945 0.66 0.824494
Target:  5'- gGCCGACuggcggCGGGCGGUgGUgCAGCucgUCGg -3'
miRNA:   3'- -CGGCUG------GCCUGCUAgCG-GUUGua-AGC- -5'
18968 3' -53.5 NC_004683.1 + 53741 0.67 0.815311
Target:  5'- cGCCGACCGGcccgaucaGCuGGacugcacggcUCGCCAACGgcaUCa -3'
miRNA:   3'- -CGGCUGGCC--------UG-CU----------AGCGGUUGUa--AGc -5'
18968 3' -53.5 NC_004683.1 + 1384 0.67 0.815311
Target:  5'- cUCGGCUGGcACGAcaaGCCGGCGaUCGa -3'
miRNA:   3'- cGGCUGGCC-UGCUag-CGGUUGUaAGC- -5'
18968 3' -53.5 NC_004683.1 + 41982 0.67 0.815311
Target:  5'- aGCCGauGCCGGAUGG-CGUaGACGcUCGg -3'
miRNA:   3'- -CGGC--UGGCCUGCUaGCGgUUGUaAGC- -5'
18968 3' -53.5 NC_004683.1 + 1643 0.67 0.815311
Target:  5'- gGCCGcCgGGACGAUU-CCAACGUg-- -3'
miRNA:   3'- -CGGCuGgCCUGCUAGcGGUUGUAagc -5'
18968 3' -53.5 NC_004683.1 + 44432 0.67 0.814382
Target:  5'- aGUCGGCCGucggcuuGACGGUCGaCGGCAgcgCGa -3'
miRNA:   3'- -CGGCUGGC-------CUGCUAGCgGUUGUaa-GC- -5'
18968 3' -53.5 NC_004683.1 + 16941 0.67 0.805937
Target:  5'- cCCGGCuCGGgcgcgacgACGAUCGCguACgGUUCGg -3'
miRNA:   3'- cGGCUG-GCC--------UGCUAGCGguUG-UAAGC- -5'
18968 3' -53.5 NC_004683.1 + 12756 0.67 0.805937
Target:  5'- cGCCucgGAUCGGGuuagccgcgcUGAUCGCCGACAg-CGg -3'
miRNA:   3'- -CGG---CUGGCCU----------GCUAGCGGUUGUaaGC- -5'
18968 3' -53.5 NC_004683.1 + 22930 0.67 0.805937
Target:  5'- uCCGuAUCGGuCGAUgGCCGuacCGUUCGa -3'
miRNA:   3'- cGGC-UGGCCuGCUAgCGGUu--GUAAGC- -5'
18968 3' -53.5 NC_004683.1 + 12876 0.67 0.805937
Target:  5'- cGCCGACCuGACacaaggcAUCGCCGACugcUCc -3'
miRNA:   3'- -CGGCUGGcCUGc------UAGCGGUUGua-AGc -5'
18968 3' -53.5 NC_004683.1 + 24632 0.67 0.796384
Target:  5'- aGCCGACCGGcUGGUgGUUGAUcUUCa -3'
miRNA:   3'- -CGGCUGGCCuGCUAgCGGUUGuAAGc -5'
18968 3' -53.5 NC_004683.1 + 12419 0.67 0.786661
Target:  5'- cGCCGACUcGACGcuguugcgCGCCGACAgcacCGa -3'
miRNA:   3'- -CGGCUGGcCUGCua------GCGGUUGUaa--GC- -5'
18968 3' -53.5 NC_004683.1 + 24144 0.67 0.786661
Target:  5'- cGUCG-UCGaGGCGAUCGCCGACcugCa -3'
miRNA:   3'- -CGGCuGGC-CUGCUAGCGGUUGuaaGc -5'
18968 3' -53.5 NC_004683.1 + 17870 0.67 0.786661
Target:  5'- gGCgGGCCGGG-GA-CGCCGcagcGCGUUCa -3'
miRNA:   3'- -CGgCUGGCCUgCUaGCGGU----UGUAAGc -5'
18968 3' -53.5 NC_004683.1 + 16633 0.67 0.78075
Target:  5'- aGCCaGACCGGugGGcgaaccugaccaaGCCGACGUaCGu -3'
miRNA:   3'- -CGG-CUGGCCugCUag-----------CGGUUGUAaGC- -5'
18968 3' -53.5 NC_004683.1 + 44278 0.67 0.776779
Target:  5'- gGCuCGACgCGG-CGAUCcgcGCCGACGaUCGc -3'
miRNA:   3'- -CG-GCUG-GCCuGCUAG---CGGUUGUaAGC- -5'
18968 3' -53.5 NC_004683.1 + 13596 0.68 0.766749
Target:  5'- cGCgCGAUCGGcuauGCGGgccagcUCGCCGGCAU-CGg -3'
miRNA:   3'- -CG-GCUGGCC----UGCU------AGCGGUUGUAaGC- -5'
18968 3' -53.5 NC_004683.1 + 16875 0.68 0.766749
Target:  5'- cCCGAgCCGGGCGAggacUCGCC-GCuggugUCGu -3'
miRNA:   3'- cGGCU-GGCCUGCU----AGCGGuUGua---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.