miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18968 5' -51.3 NC_004683.1 + 16662 0.67 0.915828
Target:  5'- aCCCGcacaucGACGCCAuagGCuuUCGUCAg-GUCGc -3'
miRNA:   3'- -GGGC------UUGCGGU---UGu-AGCAGUagCAGC- -5'
18968 5' -51.3 NC_004683.1 + 37531 0.67 0.915828
Target:  5'- aUCCGAuuGCGUggCAGCuuccgCGUCAUgGUCGu -3'
miRNA:   3'- -GGGCU--UGCG--GUUGua---GCAGUAgCAGC- -5'
18968 5' -51.3 NC_004683.1 + 52409 0.67 0.909431
Target:  5'- gCCGAACGCCGGaAUCGgc--CGUCc -3'
miRNA:   3'- gGGCUUGCGGUUgUAGCaguaGCAGc -5'
18968 5' -51.3 NC_004683.1 + 1585 0.67 0.909431
Target:  5'- gCCCGcGGCGgCAACGUCGccaCAUUGcCGg -3'
miRNA:   3'- -GGGC-UUGCgGUUGUAGCa--GUAGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 3475 0.67 0.902758
Target:  5'- --gGAACGgC-ACGUCGUCggCGUCGu -3'
miRNA:   3'- gggCUUGCgGuUGUAGCAGuaGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 18377 0.67 0.895814
Target:  5'- aCCUGAugGCCGAgAagGUCggCGgugCGg -3'
miRNA:   3'- -GGGCUugCGGUUgUagCAGuaGCa--GC- -5'
18968 5' -51.3 NC_004683.1 + 28722 0.67 0.895814
Target:  5'- gCCGAGCGCCGcCAa-GUCucggcCGUCGg -3'
miRNA:   3'- gGGCUUGCGGUuGUagCAGua---GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 12648 0.67 0.888601
Target:  5'- cCUCGGaaAUGCCGAgGUCGUUGUCGa-- -3'
miRNA:   3'- -GGGCU--UGCGGUUgUAGCAGUAGCagc -5'
18968 5' -51.3 NC_004683.1 + 3512 0.67 0.888601
Target:  5'- uUCUGGAUGUCGGCcgCGUCcuucUCGUCc -3'
miRNA:   3'- -GGGCUUGCGGUUGuaGCAGu---AGCAGc -5'
18968 5' -51.3 NC_004683.1 + 5431 0.67 0.888601
Target:  5'- cCCUGAACGaCAucCGUCGUUucgcccgccagGUCGUCGc -3'
miRNA:   3'- -GGGCUUGCgGUu-GUAGCAG-----------UAGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 53521 0.68 0.881124
Target:  5'- cCUCGGcgGCCAGguUGUCGUCcgCGUCGa -3'
miRNA:   3'- -GGGCUugCGGUU--GUAGCAGuaGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 29618 0.68 0.873389
Target:  5'- gCCCaGACGCCGuCGUUGUCGacuUCGaCGg -3'
miRNA:   3'- -GGGcUUGCGGUuGUAGCAGU---AGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 45000 0.68 0.873389
Target:  5'- aCCUGGAgaugccaGCCAGCGUCGUCAacaaucacaUCGaCGc -3'
miRNA:   3'- -GGGCUUg------CGGUUGUAGCAGU---------AGCaGC- -5'
18968 5' -51.3 NC_004683.1 + 28343 0.68 0.873389
Target:  5'- aCCgCGAGCGCCcGCAgcUCGgCAUCGa-- -3'
miRNA:   3'- -GG-GCUUGCGGuUGU--AGCaGUAGCagc -5'
18968 5' -51.3 NC_004683.1 + 47215 0.68 0.865403
Target:  5'- aCCGGccGCGCgaGACcUCGUCGgugUCGUCGc -3'
miRNA:   3'- gGGCU--UGCGg-UUGuAGCAGU---AGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 933 0.68 0.865403
Target:  5'- gCCCgGAugGCCAGCG-CGUgAUCuUCa -3'
miRNA:   3'- -GGG-CUugCGGUUGUaGCAgUAGcAGc -5'
18968 5' -51.3 NC_004683.1 + 55692 0.68 0.857171
Target:  5'- gUCCGcugcucAACGCUGGCGUCGUCGgcggcgacCGUCa -3'
miRNA:   3'- -GGGC------UUGCGGUUGUAGCAGUa-------GCAGc -5'
18968 5' -51.3 NC_004683.1 + 40927 0.68 0.848702
Target:  5'- aCCCGGGCGCCGagcugaccGCGcCGcCGUugccCGUCGg -3'
miRNA:   3'- -GGGCUUGCGGU--------UGUaGCaGUA----GCAGC- -5'
18968 5' -51.3 NC_004683.1 + 18184 0.68 0.848702
Target:  5'- aCCGGcucguCGCCgGACAUCGccguagaCAUCGUCGc -3'
miRNA:   3'- gGGCUu----GCGG-UUGUAGCa------GUAGCAGC- -5'
18968 5' -51.3 NC_004683.1 + 12418 0.69 0.837351
Target:  5'- gCCGAcucgacgcuguugcGCGCCGACAgcaccgaCGUCucagCGUCGu -3'
miRNA:   3'- gGGCU--------------UGCGGUUGUa------GCAGua--GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.