Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18969 | 5' | -61.3 | NC_004683.1 | + | 54952 | 1.05 | 0.000413 |
Target: 5'- cACCGGCGCCCGCGGCUGCAUGAUCUAc -3' miRNA: 3'- -UGGCCGCGGGCGCCGACGUACUAGAU- -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 49489 | 0.66 | 0.389051 |
Target: 5'- cCCGGUGCgCCGCuGCcugGCggGAUCUu -3' miRNA: 3'- uGGCCGCG-GGCGcCGa--CGuaCUAGAu -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 43904 | 0.66 | 0.355006 |
Target: 5'- cCCGGCGCgCGUGGUcgagUGCcagcUGAUCa- -3' miRNA: 3'- uGGCCGCGgGCGCCG----ACGu---ACUAGau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 31997 | 0.67 | 0.315485 |
Target: 5'- cGCgGGCGgCUgaggcgguGCGGCUGaCAUGGUCg- -3' miRNA: 3'- -UGgCCGCgGG--------CGCCGAC-GUACUAGau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 21569 | 0.67 | 0.30799 |
Target: 5'- -gCGGCGgCgGUGGCgggcgcgGCAUGAUCa- -3' miRNA: 3'- ugGCCGCgGgCGCCGa------CGUACUAGau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 42574 | 0.68 | 0.300632 |
Target: 5'- gGCCGaGCGCgCCGCGGCgGUcgGggCc- -3' miRNA: 3'- -UGGC-CGCG-GGCGCCGaCGuaCuaGau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 12262 | 0.68 | 0.286326 |
Target: 5'- cCCGGCGCUgGUGGCgGCAUaGG-CUAc -3' miRNA: 3'- uGGCCGCGGgCGCCGaCGUA-CUaGAU- -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 8485 | 0.69 | 0.259334 |
Target: 5'- gACCGGCacgacuCCCGCGGCUG-GUGG-CUAc -3' miRNA: 3'- -UGGCCGc-----GGGCGCCGACgUACUaGAU- -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 248 | 0.7 | 0.19071 |
Target: 5'- cGCCGcuGCuGCCCGCGGCgggGC-UGGUCg- -3' miRNA: 3'- -UGGC--CG-CGGGCGCCGa--CGuACUAGau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 30772 | 0.72 | 0.150216 |
Target: 5'- cACCGGCGCaCCGuCGGCUGCGc------ -3' miRNA: 3'- -UGGCCGCG-GGC-GCCGACGUacuagau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 43130 | 0.72 | 0.150216 |
Target: 5'- gACCGGCGU--GCGGCUGCGUGGc--- -3' miRNA: 3'- -UGGCCGCGggCGCCGACGUACUagau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 1578 | 0.74 | 0.108393 |
Target: 5'- cCCGGCgGCCCGCGGCgGCAacGUCg- -3' miRNA: 3'- uGGCCG-CGGGCGCCGaCGUacUAGau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 21989 | 0.76 | 0.077683 |
Target: 5'- uGCUGGCGCgCGCGGCcaaGCAUGGuUCUAc -3' miRNA: 3'- -UGGCCGCGgGCGCCGa--CGUACU-AGAU- -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 28475 | 0.66 | 0.371763 |
Target: 5'- cGCCcGCGCCC-CGGCUGCGUc----- -3' miRNA: 3'- -UGGcCGCGGGcGCCGACGUAcuagau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 51058 | 0.66 | 0.363318 |
Target: 5'- cUCGGCGCCUugGCGGCgggugcgGCcgGAgcgCUGu -3' miRNA: 3'- uGGCCGCGGG--CGCCGa------CGuaCUa--GAU- -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 3280 | 0.68 | 0.272562 |
Target: 5'- cACCGGCuG-CCGCGGCaaUGCGUG-UCUc -3' miRNA: 3'- -UGGCCG-CgGGCGCCG--ACGUACuAGAu -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 48102 | 0.69 | 0.222785 |
Target: 5'- gGCCGGCGCCaccucauCGGCUGCAgcaGUUUGu -3' miRNA: 3'- -UGGCCGCGGgc-----GCCGACGUac-UAGAU- -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 1446 | 0.7 | 0.217137 |
Target: 5'- aGCCgaGGCGCUCGCGGCcgaacucgGCggGAUCg- -3' miRNA: 3'- -UGG--CCGCGGGCGCCGa-------CGuaCUAGau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 6625 | 0.71 | 0.171643 |
Target: 5'- gGCCGGCGCCUguGUGGUUGCggGcgCg- -3' miRNA: 3'- -UGGCCGCGGG--CGCCGACGuaCuaGau -5' |
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18969 | 5' | -61.3 | NC_004683.1 | + | 21819 | 0.66 | 0.380341 |
Target: 5'- cACCGGUcuGCCCGCGgGCUGgGuUGAa--- -3' miRNA: 3'- -UGGCCG--CGGGCGC-CGACgU-ACUagau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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