Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1897 | 3' | -62.2 | NC_001347.2 | + | 114453 | 0.66 | 0.754606 |
Target: 5'- -gCGCCUgugucaCCCGCgcuugagCGGCggacUGCUGACGc -3' miRNA: 3'- ugGCGGA------GGGCGa------GCCGa---ACGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 16716 | 0.66 | 0.70767 |
Target: 5'- cGCCGCC-CCUGCagcgucuagccggUgaaaucuacCGGCUgGCCGACAg -3' miRNA: 3'- -UGGCGGaGGGCG-------------A---------GCCGAaCGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 196263 | 0.66 | 0.717951 |
Target: 5'- cGCgGCCUUuuGCgagugCGGCgacggGCgCGACAa -3' miRNA: 3'- -UGgCGGAGggCGa----GCCGaa---CG-GCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 18001 | 0.66 | 0.705793 |
Target: 5'- gGCCGCCaUCCCGCagauuuacgcacguUCucuGGCc-GCCGACu -3' miRNA: 3'- -UGGCGG-AGGGCG--------------AG---CCGaaCGGCUGu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 38008 | 0.66 | 0.717951 |
Target: 5'- aGCCGCCgCgCGgcCUCGGCggcgggcGCCGACu -3' miRNA: 3'- -UGGCGGaGgGC--GAGCCGaa-----CGGCUGu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 92245 | 0.66 | 0.717951 |
Target: 5'- cCCGCCUgCCCGCa-GGCcgugGCCGcCGc -3' miRNA: 3'- uGGCGGA-GGGCGagCCGaa--CGGCuGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 82894 | 0.66 | 0.717951 |
Target: 5'- cAUCGCCUCCCGagCGaGCggGCCGcCGc -3' miRNA: 3'- -UGGCGGAGGGCgaGC-CGaaCGGCuGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 158127 | 0.66 | 0.717951 |
Target: 5'- cAUCGaCCUgCCGCUCuGGUgucugUGUCGACu -3' miRNA: 3'- -UGGC-GGAgGGCGAG-CCGa----ACGGCUGu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 38362 | 0.66 | 0.727231 |
Target: 5'- -aCGgCUCCCGCUaucgcgcaCGGCgcguccccGCCGGCGg -3' miRNA: 3'- ugGCgGAGGGCGA--------GCCGaa------CGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 66582 | 0.66 | 0.727231 |
Target: 5'- --gGCC-CUCGCcggCGGCcgUUGCCGGCAa -3' miRNA: 3'- uggCGGaGGGCGa--GCCG--AACGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 107418 | 0.66 | 0.745566 |
Target: 5'- uACCGCCa--CGCUcCGGCgcgGCgGACGa -3' miRNA: 3'- -UGGCGGaggGCGA-GCCGaa-CGgCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 135214 | 0.66 | 0.745566 |
Target: 5'- cGCCGaCC-CCgGCUgGGCg-GCCGAUg -3' miRNA: 3'- -UGGC-GGaGGgCGAgCCGaaCGGCUGu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 217096 | 0.66 | 0.745566 |
Target: 5'- cCCGCCUCgCaCGCUcaguaCGGCUuucgacuacUGCgCGGCAu -3' miRNA: 3'- uGGCGGAG-G-GCGA-----GCCGA---------ACG-GCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 113615 | 0.66 | 0.743747 |
Target: 5'- cGCgGCCUCCacgucgucgcagCGC-CGGCUggagagcgagagGCCGGCGu -3' miRNA: 3'- -UGgCGGAGG------------GCGaGCCGAa-----------CGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 85350 | 0.66 | 0.745566 |
Target: 5'- cGCCGUCgCCCGC--GGCUagGCCGAg- -3' miRNA: 3'- -UGGCGGaGGGCGagCCGAa-CGGCUgu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 16586 | 0.66 | 0.736438 |
Target: 5'- uGCCGCUgguaCCUGCUgGGU--GCCGugGg -3' miRNA: 3'- -UGGCGGa---GGGCGAgCCGaaCGGCugU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 1660 | 0.66 | 0.736438 |
Target: 5'- uGCUGCCUCa-GC-CGGCgcuCCGACAg -3' miRNA: 3'- -UGGCGGAGggCGaGCCGaacGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 1276 | 0.67 | 0.689756 |
Target: 5'- cGCUGCUg-CCGCUCGGacgGCCGuACGg -3' miRNA: 3'- -UGGCGGagGGCGAGCCgaaCGGC-UGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 38445 | 0.67 | 0.699206 |
Target: 5'- cGCCGCCgucCCCGUcgcCGGCcccGCCGcGCAg -3' miRNA: 3'- -UGGCGGa--GGGCGa--GCCGaa-CGGC-UGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 222427 | 0.67 | 0.670735 |
Target: 5'- cGCCGCgUCUCGUUCGuCgagGCCGAUc -3' miRNA: 3'- -UGGCGgAGGGCGAGCcGaa-CGGCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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