Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1897 | 3' | -62.2 | NC_001347.2 | + | 30597 | 0.73 | 0.337823 |
Target: 5'- gGCgGCUUCCUGCggcCGGCcgcggUGCCGGCGg -3' miRNA: 3'- -UGgCGGAGGGCGa--GCCGa----ACGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 188163 | 0.72 | 0.371729 |
Target: 5'- gGCCGCCgaagcccacgcugCCCGUUCGGCggccGUCGGCu -3' miRNA: 3'- -UGGCGGa------------GGGCGAGCCGaa--CGGCUGu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 222766 | 0.71 | 0.44786 |
Target: 5'- uGCCGCCg-CCGCccauaccaUCGGCaugucgGCCGACAa -3' miRNA: 3'- -UGGCGGagGGCG--------AGCCGaa----CGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 188357 | 0.7 | 0.490816 |
Target: 5'- -gCGCCUCCCGgaggcucUUUGGCUccagUGCCGAUg -3' miRNA: 3'- ugGCGGAGGGC-------GAGCCGA----ACGGCUGu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 226771 | 0.7 | 0.518957 |
Target: 5'- uGCCGCUgaucgcaguggCCCcacCUCGGCaUGCCGGCGc -3' miRNA: 3'- -UGGCGGa----------GGGc--GAGCCGaACGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 170097 | 0.69 | 0.537448 |
Target: 5'- cGCCGUCUCCCGa-CGGCacGCCGuCu -3' miRNA: 3'- -UGGCGGAGGGCgaGCCGaaCGGCuGu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 188909 | 0.69 | 0.55616 |
Target: 5'- cACgGCC-CCCGCUcCGGCc--CCGACAc -3' miRNA: 3'- -UGgCGGaGGGCGA-GCCGaacGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 176195 | 0.69 | 0.565588 |
Target: 5'- cACCGCCUCCgaaCGCUCGugaGCaacaGUCGGCAg -3' miRNA: 3'- -UGGCGGAGG---GCGAGC---CGaa--CGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 5804 | 0.68 | 0.584561 |
Target: 5'- gGCgGCCcUCCGUUCGGCUcggGUCGugGg -3' miRNA: 3'- -UGgCGGaGGGCGAGCCGAa--CGGCugU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 175851 | 0.68 | 0.584561 |
Target: 5'- cACCGCCaacagCaCCGC-CGGCUacGUCGACAu -3' miRNA: 3'- -UGGCGGa----G-GGCGaGCCGAa-CGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 172697 | 0.68 | 0.594096 |
Target: 5'- aGCCGCCgacgCUgGCgcugCGGCUgaaGCCGuACAa -3' miRNA: 3'- -UGGCGGa---GGgCGa---GCCGAa--CGGC-UGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 124878 | 0.68 | 0.594096 |
Target: 5'- cACCGCCUCCCGa--GGCacGUCGGg- -3' miRNA: 3'- -UGGCGGAGGGCgagCCGaaCGGCUgu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 168298 | 0.68 | 0.622822 |
Target: 5'- aACCGCCcuUCuuGCcgCGGCgcucgGUCGACGc -3' miRNA: 3'- -UGGCGG--AGggCGa-GCCGaa---CGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 38308 | 0.67 | 0.651605 |
Target: 5'- -gCGCC-CCCGC-CGGCggcGCCGuACGg -3' miRNA: 3'- ugGCGGaGGGCGaGCCGaa-CGGC-UGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 196141 | 0.67 | 0.651605 |
Target: 5'- gGCCGCUgCCUGC-CGGCggcccugUGCCG-CGg -3' miRNA: 3'- -UGGCGGaGGGCGaGCCGa------ACGGCuGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 2398 | 0.67 | 0.66118 |
Target: 5'- cGCCGCCgaggCCgCGCggCGGCUgcUGcCCGAg- -3' miRNA: 3'- -UGGCGGa---GG-GCGa-GCCGA--AC-GGCUgu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 157399 | 0.67 | 0.66118 |
Target: 5'- -aCGCUUCCUGCgcgaaUGGCUggugUGUCGGCAa -3' miRNA: 3'- ugGCGGAGGGCGa----GCCGA----ACGGCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 75566 | 0.67 | 0.670735 |
Target: 5'- gGCCGCCUgCUCGCagGGCgUGCguuCGAUAa -3' miRNA: 3'- -UGGCGGA-GGGCGagCCGaACG---GCUGU- -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 222427 | 0.67 | 0.670735 |
Target: 5'- cGCCGCgUCUCGUUCGuCgagGCCGAUc -3' miRNA: 3'- -UGGCGgAGGGCGAGCcGaa-CGGCUGu -5' |
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1897 | 3' | -62.2 | NC_001347.2 | + | 47774 | 0.67 | 0.680263 |
Target: 5'- aGCCGCCgugccUCCGgUUGGUg-GCCGGCGg -3' miRNA: 3'- -UGGCGGa----GGGCgAGCCGaaCGGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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