miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1897 5' -54.1 NC_001347.2 + 51446 0.66 0.975015
Target:  5'- cUCGCGUuuugauaaccuaccuGGugucgcGGCGUcGGUAGAGGCu -3'
miRNA:   3'- aAGCGCGu--------------CCu-----UCGCAaCCAUCUCUG- -5'
1897 5' -54.1 NC_001347.2 + 65713 0.66 0.972068
Target:  5'- -gCGCGaCAcGGuGGCGgcGGUGGAGGg -3'
miRNA:   3'- aaGCGC-GU-CCuUCGCaaCCAUCUCUg -5'
1897 5' -54.1 NC_001347.2 + 142576 0.66 0.966082
Target:  5'- gUCG-GCGGGAgcAGCGggGGcggcGGGGGCa -3'
miRNA:   3'- aAGCgCGUCCU--UCGCaaCCa---UCUCUG- -5'
1897 5' -54.1 NC_001347.2 + 142989 0.67 0.962773
Target:  5'- --gGCGgAGGAgccggcGGCGgcggUGGUGGAGGa -3'
miRNA:   3'- aagCGCgUCCU------UCGCa---ACCAUCUCUg -5'
1897 5' -54.1 NC_001347.2 + 184641 0.67 0.962773
Target:  5'- --gGUGUAGGAAGCuGUUcugcaGGUAGuGGCg -3'
miRNA:   3'- aagCGCGUCCUUCG-CAA-----CCAUCuCUG- -5'
1897 5' -54.1 NC_001347.2 + 80350 0.67 0.955494
Target:  5'- --gGUGguGGAAGCGgUGGaGGAcGACa -3'
miRNA:   3'- aagCGCguCCUUCGCaACCaUCU-CUG- -5'
1897 5' -54.1 NC_001347.2 + 99574 0.67 0.955494
Target:  5'- -cCGCGCucgucgucGGGAGCGc-GGUGGaAGACa -3'
miRNA:   3'- aaGCGCGu-------CCUUCGCaaCCAUC-UCUG- -5'
1897 5' -54.1 NC_001347.2 + 161347 0.68 0.917056
Target:  5'- gUUGgGCAGGAcucccuCGUUGG-AGAGACg -3'
miRNA:   3'- aAGCgCGUCCUuc----GCAACCaUCUCUG- -5'
1897 5' -54.1 NC_001347.2 + 140644 0.68 0.917056
Target:  5'- gUCGUGguGGuGGgGgUGGUGGGGAUu -3'
miRNA:   3'- aAGCGCguCCuUCgCaACCAUCUCUG- -5'
1897 5' -54.1 NC_001347.2 + 143743 0.68 0.917056
Target:  5'- -gCGCGuCAGGAAGUGUacGUcgaAGGGACg -3'
miRNA:   3'- aaGCGC-GUCCUUCGCAacCA---UCUCUG- -5'
1897 5' -54.1 NC_001347.2 + 173535 0.69 0.898703
Target:  5'- gUCGCGU-GGcGGCGgcGGUGGuGGCg -3'
miRNA:   3'- aAGCGCGuCCuUCGCaaCCAUCuCUG- -5'
1897 5' -54.1 NC_001347.2 + 157218 0.69 0.892116
Target:  5'- -gUGCGCugcagccggAGGAAGCGgcGGUAGAaACg -3'
miRNA:   3'- aaGCGCG---------UCCUUCGCaaCCAUCUcUG- -5'
1897 5' -54.1 NC_001347.2 + 144237 0.69 0.892116
Target:  5'- cUUCGUGCucgGGGAaaaGGCGUUGGacggGGAGGa -3'
miRNA:   3'- -AAGCGCG---UCCU---UCGCAACCa---UCUCUg -5'
1897 5' -54.1 NC_001347.2 + 144596 0.7 0.86352
Target:  5'- cUCGUGgAGGAGGCaagaaagUGGUAGGGGg -3'
miRNA:   3'- aAGCGCgUCCUUCGca-----ACCAUCUCUg -5'
1897 5' -54.1 NC_001347.2 + 40703 0.71 0.83074
Target:  5'- gUUCGCGCcgcguagGGGAGGUuacGUUGGggacGGGGACa -3'
miRNA:   3'- -AAGCGCG-------UCCUUCG---CAACCa---UCUCUG- -5'
1897 5' -54.1 NC_001347.2 + 40650 0.73 0.700406
Target:  5'- -gUGUGCGGGAcGGUGUUGGggccGGGGACg -3'
miRNA:   3'- aaGCGCGUCCU-UCGCAACCa---UCUCUG- -5'
1897 5' -54.1 NC_001347.2 + 198130 0.77 0.498368
Target:  5'- gUCGCGCGGuGGcAGCGggggUGGUGGGGAUc -3'
miRNA:   3'- aAGCGCGUC-CU-UCGCa---ACCAUCUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.