Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1897 | 5' | -54.1 | NC_001347.2 | + | 198130 | 0.77 | 0.498368 |
Target: 5'- gUCGCGCGGuGGcAGCGggggUGGUGGGGAUc -3' miRNA: 3'- aAGCGCGUC-CU-UCGCa---ACCAUCUCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 40650 | 0.73 | 0.700406 |
Target: 5'- -gUGUGCGGGAcGGUGUUGGggccGGGGACg -3' miRNA: 3'- aaGCGCGUCCU-UCGCAACCa---UCUCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 40703 | 0.71 | 0.83074 |
Target: 5'- gUUCGCGCcgcguagGGGAGGUuacGUUGGggacGGGGACa -3' miRNA: 3'- -AAGCGCG-------UCCUUCG---CAACCa---UCUCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 144596 | 0.7 | 0.86352 |
Target: 5'- cUCGUGgAGGAGGCaagaaagUGGUAGGGGg -3' miRNA: 3'- aAGCGCgUCCUUCGca-----ACCAUCUCUg -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 144237 | 0.69 | 0.892116 |
Target: 5'- cUUCGUGCucgGGGAaaaGGCGUUGGacggGGAGGa -3' miRNA: 3'- -AAGCGCG---UCCU---UCGCAACCa---UCUCUg -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 157218 | 0.69 | 0.892116 |
Target: 5'- -gUGCGCugcagccggAGGAAGCGgcGGUAGAaACg -3' miRNA: 3'- aaGCGCG---------UCCUUCGCaaCCAUCUcUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 173535 | 0.69 | 0.898703 |
Target: 5'- gUCGCGU-GGcGGCGgcGGUGGuGGCg -3' miRNA: 3'- aAGCGCGuCCuUCGCaaCCAUCuCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 161347 | 0.68 | 0.917056 |
Target: 5'- gUUGgGCAGGAcucccuCGUUGG-AGAGACg -3' miRNA: 3'- aAGCgCGUCCUuc----GCAACCaUCUCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 143743 | 0.68 | 0.917056 |
Target: 5'- -gCGCGuCAGGAAGUGUacGUcgaAGGGACg -3' miRNA: 3'- aaGCGC-GUCCUUCGCAacCA---UCUCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 140644 | 0.68 | 0.917056 |
Target: 5'- gUCGUGguGGuGGgGgUGGUGGGGAUu -3' miRNA: 3'- aAGCGCguCCuUCgCaACCAUCUCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 80350 | 0.67 | 0.955494 |
Target: 5'- --gGUGguGGAAGCGgUGGaGGAcGACa -3' miRNA: 3'- aagCGCguCCUUCGCaACCaUCU-CUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 99574 | 0.67 | 0.955494 |
Target: 5'- -cCGCGCucgucgucGGGAGCGc-GGUGGaAGACa -3' miRNA: 3'- aaGCGCGu-------CCUUCGCaaCCAUC-UCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 142989 | 0.67 | 0.962773 |
Target: 5'- --gGCGgAGGAgccggcGGCGgcggUGGUGGAGGa -3' miRNA: 3'- aagCGCgUCCU------UCGCa---ACCAUCUCUg -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 184641 | 0.67 | 0.962773 |
Target: 5'- --gGUGUAGGAAGCuGUUcugcaGGUAGuGGCg -3' miRNA: 3'- aagCGCGUCCUUCG-CAA-----CCAUCuCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 142576 | 0.66 | 0.966082 |
Target: 5'- gUCG-GCGGGAgcAGCGggGGcggcGGGGGCa -3' miRNA: 3'- aAGCgCGUCCU--UCGCaaCCa---UCUCUG- -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 65713 | 0.66 | 0.972068 |
Target: 5'- -gCGCGaCAcGGuGGCGgcGGUGGAGGg -3' miRNA: 3'- aaGCGC-GU-CCuUCGCaaCCAUCUCUg -5' |
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1897 | 5' | -54.1 | NC_001347.2 | + | 51446 | 0.66 | 0.975015 |
Target: 5'- cUCGCGUuuugauaaccuaccuGGugucgcGGCGUcGGUAGAGGCu -3' miRNA: 3'- aAGCGCGu--------------CCu-----UCGCAaCCAUCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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