miRNA display CGI


Results 21 - 40 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18970 3' -55.5 NC_004683.1 + 4224 0.66 0.700711
Target:  5'- aACGuCCUCGuACCacguGCGGCGCAGCucuuCCa -3'
miRNA:   3'- -UGUuGGGGC-UGGg---CGUUGCGUUGu---GG- -5'
18970 3' -55.5 NC_004683.1 + 4290 0.73 0.315697
Target:  5'- gACGGCUCCauGACCCcgaGCAGCGCAAguugcuCGCCg -3'
miRNA:   3'- -UGUUGGGG--CUGGG---CGUUGCGUU------GUGG- -5'
18970 3' -55.5 NC_004683.1 + 4392 0.66 0.742908
Target:  5'- uACGGCCUCGGCgaGCAACuu-GCGCUg -3'
miRNA:   3'- -UGUUGGGGCUGggCGUUGcguUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 4852 0.72 0.385348
Target:  5'- gACAGCCUCGuaaaccacaugagccGCCUGgAGCGCGcCGCCg -3'
miRNA:   3'- -UGUUGGGGC---------------UGGGCgUUGCGUuGUGG- -5'
18970 3' -55.5 NC_004683.1 + 5032 0.71 0.427564
Target:  5'- cCGGCCUCGACgCGCAuGCGCcGCugGCCg -3'
miRNA:   3'- uGUUGGGGCUGgGCGU-UGCGuUG--UGG- -5'
18970 3' -55.5 NC_004683.1 + 5220 0.74 0.286028
Target:  5'- uCGACCCUGGCCCGUcagugccuggcGACGUcguCGCCg -3'
miRNA:   3'- uGUUGGGGCUGGGCG-----------UUGCGuu-GUGG- -5'
18970 3' -55.5 NC_004683.1 + 5692 0.66 0.742907
Target:  5'- -aGGCCgUGACCCucaCGAC-CGGCACCg -3'
miRNA:   3'- ugUUGGgGCUGGGc--GUUGcGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 5819 0.67 0.635657
Target:  5'- cGCggUCUaCGagcaGCUCGCcGCGCGGCACCg -3'
miRNA:   3'- -UGuuGGG-GC----UGGGCGuUGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 6123 0.66 0.741871
Target:  5'- cCAACCgCCGGCCCaacggGUcGCGCGGCugguucgcguacuACCg -3'
miRNA:   3'- uGUUGG-GGCUGGG-----CGuUGCGUUG-------------UGG- -5'
18970 3' -55.5 NC_004683.1 + 6381 0.7 0.475405
Target:  5'- --cGCCCCGGCgaccuguUCGaCGACaGCGACACCg -3'
miRNA:   3'- uguUGGGGCUG-------GGC-GUUG-CGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 6526 0.7 0.456527
Target:  5'- aGCGACCCaagaaGCCCGCGccCGCAaccacacagGCGCCg -3'
miRNA:   3'- -UGUUGGGgc---UGGGCGUu-GCGU---------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 6598 0.67 0.694273
Target:  5'- gACGACCU--GCCCGCcaagguGCGCGgccaguucgccgacaACACCg -3'
miRNA:   3'- -UGUUGGGgcUGGGCGu-----UGCGU---------------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 7870 0.72 0.399718
Target:  5'- gAC-ACCCCGACCaa-GGCGCAggGCAUCg -3'
miRNA:   3'- -UGuUGGGGCUGGgcgUUGCGU--UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 8021 0.67 0.679174
Target:  5'- uGCAGCCggUGAUgCGCAccgcggucgaGCGCGACAUCg -3'
miRNA:   3'- -UGUUGGg-GCUGgGCGU----------UGCGUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 8104 0.69 0.517396
Target:  5'- gACGACCCCGagGCUgGCAcCGaCAACcCCg -3'
miRNA:   3'- -UGUUGGGGC--UGGgCGUuGC-GUUGuGG- -5'
18970 3' -55.5 NC_004683.1 + 8110 0.7 0.50701
Target:  5'- --cGCgCUCGACCgCGguGCGCAuCACCg -3'
miRNA:   3'- uguUG-GGGCUGG-GCguUGCGUuGUGG- -5'
18970 3' -55.5 NC_004683.1 + 8244 0.66 0.700711
Target:  5'- -uGGCCgCGGCCuuCGCGGCcuCGGCGCCg -3'
miRNA:   3'- ugUUGGgGCUGG--GCGUUGc-GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 8515 0.66 0.711386
Target:  5'- cACGACCgUCGACaaccgaCUGCAGgGCGGcCACCg -3'
miRNA:   3'- -UGUUGG-GGCUG------GGCGUUgCGUU-GUGG- -5'
18970 3' -55.5 NC_004683.1 + 9226 0.67 0.657462
Target:  5'- gGCggUCCCG-CCUGgGACGCGcugGCCg -3'
miRNA:   3'- -UGuuGGGGCuGGGCgUUGCGUug-UGG- -5'
18970 3' -55.5 NC_004683.1 + 10030 0.7 0.50701
Target:  5'- gGCAGCCCCG-CUCGUcACGgu-CGCCg -3'
miRNA:   3'- -UGUUGGGGCuGGGCGuUGCguuGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.