miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18970 3' -55.5 NC_004683.1 + 45903 0.66 0.721984
Target:  5'- -uGACCCCG-CCgGUuccCGC-GCACCg -3'
miRNA:   3'- ugUUGGGGCuGGgCGuu-GCGuUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 4095 0.66 0.721984
Target:  5'- ---cCCCCGACggcaagaucauCCGCGACgaGCAGCAgCu -3'
miRNA:   3'- uguuGGGGCUG-----------GGCGUUG--CGUUGUgG- -5'
18970 3' -55.5 NC_004683.1 + 46281 0.66 0.711386
Target:  5'- gGCAACCagcgucccgaugUUGACCgGCuGACGCGGC-CCg -3'
miRNA:   3'- -UGUUGG------------GGCUGGgCG-UUGCGUUGuGG- -5'
18970 3' -55.5 NC_004683.1 + 51851 0.66 0.711386
Target:  5'- cACGGCggCCGACCgCGCucgaGCuGCACCa -3'
miRNA:   3'- -UGUUGg-GGCUGG-GCGuug-CGuUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 21925 0.66 0.711386
Target:  5'- gGCAAUCCCGGCaauCCGCccggcgGugGCGGgcggcCGCCg -3'
miRNA:   3'- -UGUUGGGGCUG---GGCG------UugCGUU-----GUGG- -5'
18970 3' -55.5 NC_004683.1 + 8515 0.66 0.711386
Target:  5'- cACGACCgUCGACaaccgaCUGCAGgGCGGcCACCg -3'
miRNA:   3'- -UGUUGG-GGCUG------GGCGUUgCGUU-GUGG- -5'
18970 3' -55.5 NC_004683.1 + 21737 0.66 0.711386
Target:  5'- uCAACCCa-GCCCGCGG-GCAG-ACCg -3'
miRNA:   3'- uGUUGGGgcUGGGCGUUgCGUUgUGG- -5'
18970 3' -55.5 NC_004683.1 + 20407 0.66 0.711386
Target:  5'- gGCGcACCCgGGgCgGcCAACGgCGGCACCg -3'
miRNA:   3'- -UGU-UGGGgCUgGgC-GUUGC-GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 49019 0.66 0.711386
Target:  5'- uCAAgCCCGACCgGgaAGCGCucGCACg -3'
miRNA:   3'- uGUUgGGGCUGGgCg-UUGCGu-UGUGg -5'
18970 3' -55.5 NC_004683.1 + 48357 0.66 0.700711
Target:  5'- aGCGGCCauggUGAUUCGCuGCGCAGCcacucGCCg -3'
miRNA:   3'- -UGUUGGg---GCUGGGCGuUGCGUUG-----UGG- -5'
18970 3' -55.5 NC_004683.1 + 26935 0.66 0.700711
Target:  5'- uCAACCUCGAUCCGCAGuuguCGa---ACCa -3'
miRNA:   3'- uGUUGGGGCUGGGCGUU----GCguugUGG- -5'
18970 3' -55.5 NC_004683.1 + 4224 0.66 0.700711
Target:  5'- aACGuCCUCGuACCacguGCGGCGCAGCucuuCCa -3'
miRNA:   3'- -UGUuGGGGC-UGGg---CGUUGCGUUGu---GG- -5'
18970 3' -55.5 NC_004683.1 + 8244 0.66 0.700711
Target:  5'- -uGGCCgCGGCCuuCGCGGCcuCGGCGCCg -3'
miRNA:   3'- ugUUGGgGCUGG--GCGUUGc-GUUGUGG- -5'
18970 3' -55.5 NC_004683.1 + 53914 0.66 0.70071
Target:  5'- gGCGAUCCCG-CCCGagAugGCAAaggacaugGCCg -3'
miRNA:   3'- -UGUUGGGGCuGGGCg-UugCGUUg-------UGG- -5'
18970 3' -55.5 NC_004683.1 + 2392 0.66 0.70071
Target:  5'- aGCAgacACUggCCGGCCCGuCGACGgAauugGCGCCu -3'
miRNA:   3'- -UGU---UGG--GGCUGGGC-GUUGCgU----UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 53719 0.66 0.699639
Target:  5'- uCAGCCgCGGCCagguCGCGGCGgGccugaucGCGCCg -3'
miRNA:   3'- uGUUGGgGCUGG----GCGUUGCgU-------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 1071 0.66 0.697495
Target:  5'- -gGugCCUGACCCGCAguuGCugauuggcucgucgGCAugccACGCCg -3'
miRNA:   3'- ugUugGGGCUGGGCGU---UG--------------CGU----UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 6598 0.67 0.694273
Target:  5'- gACGACCU--GCCCGCcaagguGCGCGgccaguucgccgacaACACCg -3'
miRNA:   3'- -UGUUGGGgcUGGGCGu-----UGCGU---------------UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 41954 0.67 0.68997
Target:  5'- gGCGcCCCuCGGCCUGCcaguGACGaccguuGCGCCg -3'
miRNA:   3'- -UGUuGGG-GCUGGGCG----UUGCgu----UGUGG- -5'
18970 3' -55.5 NC_004683.1 + 13488 0.67 0.68997
Target:  5'- gGCGugUCgGGCCUGCcgaugGACGCGAUcaugACCg -3'
miRNA:   3'- -UGUugGGgCUGGGCG-----UUGCGUUG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.