Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18970 | 5' | -50.9 | NC_004683.1 | + | 54270 | 0.66 | 0.939771 |
Target: 5'- uUCGGgGUCgAGCUGCgcGAuGGCCUUGa -3' miRNA: 3'- -GGCUgCAGgUUGACGaaCU-UUGGGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 53648 | 0.66 | 0.928841 |
Target: 5'- gCCGGCGUCUGccGCgGCguu--GCCCUGc -3' miRNA: 3'- -GGCUGCAGGU--UGaCGaacuuUGGGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 12240 | 0.66 | 0.928264 |
Target: 5'- gCGACGgaucaaaCGACgGCUUGGccgaaucGGCCCUGc -3' miRNA: 3'- gGCUGCag-----GUUGaCGAACU-------UUGGGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 52563 | 0.66 | 0.922943 |
Target: 5'- gCCGAg--CCAGC-GCgcGAGACCCUGc -3' miRNA: 3'- -GGCUgcaGGUUGaCGaaCUUUGGGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 4454 | 0.66 | 0.939771 |
Target: 5'- uCCGACGacgcgcagcgaUCCAcCcGCUcGGAACCCUc -3' miRNA: 3'- -GGCUGC-----------AGGUuGaCGAaCUUUGGGAc -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 11513 | 0.66 | 0.916756 |
Target: 5'- aCCGcacgagcaGCGUUCGGCgccgUGCUgGAuGCCCUGg -3' miRNA: 3'- -GGC--------UGCAGGUUG----ACGAaCUuUGGGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 6948 | 0.67 | 0.903521 |
Target: 5'- gCGcCGUCCAGCggccguaggGCUUGGuaagcguGCCCUu -3' miRNA: 3'- gGCuGCAGGUUGa--------CGAACUu------UGGGAc -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 43131 | 0.67 | 0.896478 |
Target: 5'- aCCGGCGUgCGGCUGCgu--GGCCg-- -3' miRNA: 3'- -GGCUGCAgGUUGACGaacuUUGGgac -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 4443 | 0.67 | 0.892118 |
Target: 5'- gCUGGCGUCUcGCUGCgcggcuucguccugUGAGACCg-- -3' miRNA: 3'- -GGCUGCAGGuUGACGa-------------ACUUUGGgac -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 36070 | 0.68 | 0.865574 |
Target: 5'- uCCGgcagaACGUCCGAUUGUgucgaggagUGGGACCCc- -3' miRNA: 3'- -GGC-----UGCAGGUUGACGa--------ACUUUGGGac -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 3943 | 0.68 | 0.865573 |
Target: 5'- gCCGugGUCgAACUGC-----ACCUUGg -3' miRNA: 3'- -GGCugCAGgUUGACGaacuuUGGGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 792 | 0.68 | 0.830617 |
Target: 5'- aCCGAgGgCCGcCUGCUUcucGAAACCCg- -3' miRNA: 3'- -GGCUgCaGGUuGACGAA---CUUUGGGac -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 52767 | 0.68 | 0.84857 |
Target: 5'- aCGACGUCgAgacACUGCaaGAGGCgCUGc -3' miRNA: 3'- gGCUGCAGgU---UGACGaaCUUUGgGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 3230 | 0.68 | 0.857195 |
Target: 5'- cCCGugauCGUCgGACUGUccGAGGgCCUGg -3' miRNA: 3'- -GGCu---GCAGgUUGACGaaCUUUgGGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 52341 | 0.68 | 0.865574 |
Target: 5'- uCCGGCGUUCGGCgGUacuc-GCCCUGg -3' miRNA: 3'- -GGCUGCAGGUUGaCGaacuuUGGGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 32333 | 0.69 | 0.782104 |
Target: 5'- gCCGAauUGUgCCAACUcGCgUGAAACUCUGc -3' miRNA: 3'- -GGCU--GCA-GGUUGA-CGaACUUUGGGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 9894 | 0.7 | 0.749892 |
Target: 5'- cUCGGCGccgauccUCCAGCUGCUUGGccaucaCCUGc -3' miRNA: 3'- -GGCUGC-------AGGUUGACGAACUuug---GGAC- -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 48345 | 0.7 | 0.729533 |
Target: 5'- gCCGACGUCCGcauccccgcGCUGCUcGAcACuCCg- -3' miRNA: 3'- -GGCUGCAGGU---------UGACGAaCUuUG-GGac -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 32580 | 0.72 | 0.640744 |
Target: 5'- gCC-ACGUCCGGCUGCacGAuGCCCg- -3' miRNA: 3'- -GGcUGCAGGUUGACGaaCUuUGGGac -5' |
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18970 | 5' | -50.9 | NC_004683.1 | + | 18950 | 0.74 | 0.551331 |
Target: 5'- gUCGcaaauCGUCCGgcACUGCUUGGGcCCCUGu -3' miRNA: 3'- -GGCu----GCAGGU--UGACGAACUUuGGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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