Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18971 | 5' | -54.6 | NC_004683.1 | + | 396 | 0.68 | 0.679175 |
Target: 5'- gCGC-CUGC--UGGCCGaGAACCGUCu -3' miRNA: 3'- -GCGaGAUGcaGCCGGUaCUUGGCAGc -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 1237 | 0.67 | 0.742908 |
Target: 5'- cCGCaCUAUGUCGGCUAUccGGGCUG-CGc -3' miRNA: 3'- -GCGaGAUGCAGCCGGUA--CUUGGCaGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 3375 | 0.68 | 0.679175 |
Target: 5'- uGCUgUGcCGUCGGCCA---GgCGUCGg -3' miRNA: 3'- gCGAgAU-GCAGCCGGUacuUgGCAGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 24029 | 0.68 | 0.678092 |
Target: 5'- uGCUCgACGagcUUGGCCAgggUGAccggcccgacgauGCCGUCGg -3' miRNA: 3'- gCGAGaUGC---AGCCGGU---ACU-------------UGGCAGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 25467 | 0.67 | 0.742908 |
Target: 5'- -cCUCUACGUggUGGCCAccgcggcgcUG-GCCGUCGc -3' miRNA: 3'- gcGAGAUGCA--GCCGGU---------ACuUGGCAGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 25707 | 0.71 | 0.517397 |
Target: 5'- uGCaUCUGCGUCGGCCugcuGCUGcUCGc -3' miRNA: 3'- gCG-AGAUGCAGCCGGuacuUGGC-AGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 26543 | 0.68 | 0.68997 |
Target: 5'- gGCUCgGCGggCGGCC-UGGAUCG-CGg -3' miRNA: 3'- gCGAGaUGCa-GCCGGuACUUGGCaGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 26989 | 0.66 | 0.783344 |
Target: 5'- aCGCgaucaUCU-UGUCGGCCGaccucgccgaUGAcGCCGUCGu -3' miRNA: 3'- -GCG-----AGAuGCAGCCGGU----------ACU-UGGCAGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 41961 | 0.69 | 0.60295 |
Target: 5'- aCGCUCggGCGccccUCGGCCugccaGUGAcgACCGUUGc -3' miRNA: 3'- -GCGAGa-UGC----AGCCGG-----UACU--UGGCAGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 44230 | 0.69 | 0.581252 |
Target: 5'- aCGCaauucccugaUCU-CGUCGGCgGUGAACaCGUCc -3' miRNA: 3'- -GCG----------AGAuGCAGCCGgUACUUG-GCAGc -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 44337 | 0.66 | 0.793094 |
Target: 5'- gCGCUC-GCG-CuGCCGUcGACCGUCa -3' miRNA: 3'- -GCGAGaUGCaGcCGGUAcUUGGCAGc -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 44720 | 0.69 | 0.624745 |
Target: 5'- gCGCUCaUGCGUUGGgcCCGUcGAACaUGUCGa -3' miRNA: 3'- -GCGAG-AUGCAGCC--GGUA-CUUG-GCAGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 45005 | 0.66 | 0.802679 |
Target: 5'- gGCag-GCGcUGGCCAcuggUGAACCGUCc -3' miRNA: 3'- gCGagaUGCaGCCGGU----ACUUGGCAGc -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 46633 | 0.66 | 0.773439 |
Target: 5'- cCGCUCgAUGcCGGCCcgGAuCCG-CGc -3' miRNA: 3'- -GCGAGaUGCaGCCGGuaCUuGGCaGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 47706 | 0.73 | 0.399718 |
Target: 5'- gCGCUCagGCGUCGGCCGUcgGGAUUGUg- -3' miRNA: 3'- -GCGAGa-UGCAGCCGGUA--CUUGGCAgc -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 53306 | 0.67 | 0.700711 |
Target: 5'- uCGCagUACG-CGGUCAgGAACuCGUCGu -3' miRNA: 3'- -GCGagAUGCaGCCGGUaCUUG-GCAGC- -5' |
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18971 | 5' | -54.6 | NC_004683.1 | + | 55589 | 1.1 | 0.001201 |
Target: 5'- aCGCUCUACGUCGGCCAUGAACCGUCGa -3' miRNA: 3'- -GCGAGAUGCAGCCGGUACUUGGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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