miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 3' -59.6 NC_004683.1 + 26333 0.67 0.48163
Target:  5'- gGUUGccUCGGCGaGCaGAUUGUCGCGCuCGa -3'
miRNA:   3'- gCAGC--AGCCGC-CG-CUGGCAGUGUG-GC- -5'
18972 3' -59.6 NC_004683.1 + 33942 0.68 0.453036
Target:  5'- cCG-CGUCGGCuGGauCGGCCG--GCACCGg -3'
miRNA:   3'- -GCaGCAGCCG-CC--GCUGGCagUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 21250 0.68 0.453036
Target:  5'- gCGUCGUCGGUGcCGAcaCCGUggucCGCgGCCGg -3'
miRNA:   3'- -GCAGCAGCCGCcGCU--GGCA----GUG-UGGC- -5'
18972 3' -59.6 NC_004683.1 + 30520 0.68 0.453036
Target:  5'- uGUCGcugaGGCugauGGCGGCCGUUACguucggguGCCGg -3'
miRNA:   3'- gCAGCag--CCG----CCGCUGGCAGUG--------UGGC- -5'
18972 3' -59.6 NC_004683.1 + 13364 0.68 0.453036
Target:  5'- aGUCucCGGUGGCGGCgG-CACGCUGc -3'
miRNA:   3'- gCAGcaGCCGCCGCUGgCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 42155 0.68 0.434494
Target:  5'- cCGUCGUCugagGGCGGCaGugUGaC-CACCGg -3'
miRNA:   3'- -GCAGCAG----CCGCCG-CugGCaGuGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 53706 0.68 0.434494
Target:  5'- gGUCG-CGGCGG-GcCUGaUCGCGCCGc -3'
miRNA:   3'- gCAGCaGCCGCCgCuGGC-AGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 53123 0.68 0.416401
Target:  5'- uCGUCGUUGGaGGUGACCaugucgacguUCGCGCCc -3'
miRNA:   3'- -GCAGCAGCCgCCGCUGGc---------AGUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 46705 0.69 0.391001
Target:  5'- gGUCGgcugaucgacgggcgCGGCGGCcuuGCCGUCGCgGCCc -3'
miRNA:   3'- gCAGCa--------------GCCGCCGc--UGGCAGUG-UGGc -5'
18972 3' -59.6 NC_004683.1 + 16211 0.69 0.389287
Target:  5'- aGUCGUgGGUgucgauguaguacGGCaGCCG-CACGCCGg -3'
miRNA:   3'- gCAGCAgCCG-------------CCGcUGGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 40870 0.69 0.381635
Target:  5'- uCGcCGUCGGCGaGCGcguCgGUCGCGgCGg -3'
miRNA:   3'- -GCaGCAGCCGC-CGCu--GgCAGUGUgGC- -5'
18972 3' -59.6 NC_004683.1 + 13821 0.69 0.372419
Target:  5'- uGUUGccCGGCGGUguuuggcagcgcaGGCCG-CGCACCGg -3'
miRNA:   3'- gCAGCa-GCCGCCG-------------CUGGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 31442 0.69 0.364993
Target:  5'- -----aCGGCGGCGGCgGUCAC-CCa -3'
miRNA:   3'- gcagcaGCCGCCGCUGgCAGUGuGGc -5'
18972 3' -59.6 NC_004683.1 + 43008 0.69 0.364993
Target:  5'- cCGUCGcggUCGGCuucuccgacGGCGuACCGUC-CGCCu -3'
miRNA:   3'- -GCAGC---AGCCG---------CCGC-UGGCAGuGUGGc -5'
18972 3' -59.6 NC_004683.1 + 51677 0.69 0.356862
Target:  5'- gCGUCGagcUCGGCcuGGCGACgGUCGaGCCc -3'
miRNA:   3'- -GCAGC---AGCCG--CCGCUGgCAGUgUGGc -5'
18972 3' -59.6 NC_004683.1 + 3597 0.69 0.356862
Target:  5'- cCG-CGUCGGCGuCGAgCGaUACACCGa -3'
miRNA:   3'- -GCaGCAGCCGCcGCUgGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 45686 0.7 0.348859
Target:  5'- uCGUCGUCGGgcaccacccCGGCGucgaccagGCCGUCaacgaGCGCCu -3'
miRNA:   3'- -GCAGCAGCC---------GCCGC--------UGGCAG-----UGUGGc -5'
18972 3' -59.6 NC_004683.1 + 6735 0.7 0.348066
Target:  5'- aGUCGaCGGCccgGGCGGCCGcgugcugUCGCuGCCGa -3'
miRNA:   3'- gCAGCaGCCG---CCGCUGGC-------AGUG-UGGC- -5'
18972 3' -59.6 NC_004683.1 + 18193 0.7 0.33324
Target:  5'- --gUGcCGGCGGCGACCGcgaUCGUGCCGa -3'
miRNA:   3'- gcaGCaGCCGCCGCUGGC---AGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 10708 0.7 0.325625
Target:  5'- gCGguaggCGUCGGUGGCaucgcgGACCGccCGCACCu -3'
miRNA:   3'- -GCa----GCAGCCGCCG------CUGGCa-GUGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.