miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 5' -58.7 NC_004683.1 + 53021 0.67 0.452248
Target:  5'- -aCGUGCGCGAguUGGUacCGGGCCAc -3'
miRNA:   3'- aaGCGCGUGCUguACCGgcGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 5835 0.67 0.452248
Target:  5'- cUCGcCGCGCGGCAccGCCGCcaAGGCg- -3'
miRNA:   3'- aAGC-GCGUGCUGUacCGGCG--UCUGgu -5'
18972 5' -58.7 NC_004683.1 + 20402 0.67 0.442546
Target:  5'- gUUCGCGCGgGACAUGaacgcgcuGCCGCcgucGCCGc -3'
miRNA:   3'- -AAGCGCGUgCUGUAC--------CGGCGuc--UGGU- -5'
18972 5' -58.7 NC_004683.1 + 2745 0.67 0.439659
Target:  5'- aUgGUGCGCGGC--GGCCGCGGcgagcucggcggcgGCCAa -3'
miRNA:   3'- aAgCGCGUGCUGuaCCGGCGUC--------------UGGU- -5'
18972 5' -58.7 NC_004683.1 + 18175 0.67 0.432012
Target:  5'- aUCGUGC-CGAUcugauagGUGGCCGUGGugCc -3'
miRNA:   3'- aAGCGCGuGCUG-------UACCGGCGUCugGu -5'
18972 5' -58.7 NC_004683.1 + 26800 0.67 0.423502
Target:  5'- gUCGCGCAgGGCuauccGCUGgCGGGCCAc -3'
miRNA:   3'- aAGCGCGUgCUGuac--CGGC-GUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 53283 0.67 0.423502
Target:  5'- gUCGUGCucACGGCGUGcgcGCUGCAGggauuGCCAg -3'
miRNA:   3'- aAGCGCG--UGCUGUAC---CGGCGUC-----UGGU- -5'
18972 5' -58.7 NC_004683.1 + 38488 0.67 0.423502
Target:  5'- -cCGUGCuCGGCgaacauGUGGUCGCAGACg- -3'
miRNA:   3'- aaGCGCGuGCUG------UACCGGCGUCUGgu -5'
18972 5' -58.7 NC_004683.1 + 18978 0.67 0.422563
Target:  5'- -gUGCGCACGAacucCcgGGCCGCcuccugcGGAUCGa -3'
miRNA:   3'- aaGCGCGUGCU----GuaCCGGCG-------UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 26966 0.67 0.414166
Target:  5'- -gCGCGUACG-CGUGagcGCCggGCAGGCCGg -3'
miRNA:   3'- aaGCGCGUGCuGUAC---CGG--CGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 33845 0.68 0.369446
Target:  5'- cUCGCGCGguCG-CcgGGaccaCCGCAGGCCAu -3'
miRNA:   3'- aAGCGCGU--GCuGuaCC----GGCGUCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 45546 0.68 0.369446
Target:  5'- gUCGCGCGCGAgaaGUGcuGCgGCGGugCGg -3'
miRNA:   3'- aAGCGCGUGCUg--UAC--CGgCGUCugGU- -5'
18972 5' -58.7 NC_004683.1 + 51813 0.68 0.369446
Target:  5'- --gGCgGCGCGGCAcUGGUCGCGG-CCGu -3'
miRNA:   3'- aagCG-CGUGCUGU-ACCGGCGUCuGGU- -5'
18972 5' -58.7 NC_004683.1 + 52954 0.68 0.369446
Target:  5'- cUCGCGCACGuGCgugagGUGGCCagaaagaagcGCAGGCgCAa -3'
miRNA:   3'- aAGCGCGUGC-UG-----UACCGG----------CGUCUG-GU- -5'
18972 5' -58.7 NC_004683.1 + 53640 0.68 0.360908
Target:  5'- -cCGC-CGCGACcUGGCCGCGG-CUg -3'
miRNA:   3'- aaGCGcGUGCUGuACCGGCGUCuGGu -5'
18972 5' -58.7 NC_004683.1 + 51127 0.68 0.360908
Target:  5'- -cCG-GCGCGAag-GGCCGCAaGGCCGa -3'
miRNA:   3'- aaGCgCGUGCUguaCCGGCGU-CUGGU- -5'
18972 5' -58.7 NC_004683.1 + 42702 0.68 0.360908
Target:  5'- gUCGCGgGCGuCGUcgcGGUCGCcGACCAc -3'
miRNA:   3'- aAGCGCgUGCuGUA---CCGGCGuCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 50958 0.69 0.352508
Target:  5'- gUCGCGCACaGCGcuccGGCCGCAcccGCCGc -3'
miRNA:   3'- aAGCGCGUGcUGUa---CCGGCGUc--UGGU- -5'
18972 5' -58.7 NC_004683.1 + 44845 0.69 0.320307
Target:  5'- cUCGCGCAaucgcCGugGUGGCCcgGCcuggAGGCCGa -3'
miRNA:   3'- aAGCGCGU-----GCugUACCGG--CG----UCUGGU- -5'
18972 5' -58.7 NC_004683.1 + 10490 0.7 0.31261
Target:  5'- --gGCGCGCGAU---GCUGCGGGCCGg -3'
miRNA:   3'- aagCGCGUGCUGuacCGGCGUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.