miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18973 3' -58.1 NC_004683.1 + 26248 0.66 0.554547
Target:  5'- cGC-CGGUUcaugaucGCGAGGaUCAGCgagACCGCCg -3'
miRNA:   3'- -UGaGCCAA-------CGCUCC-GGUUGg--UGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 12367 0.66 0.541948
Target:  5'- --aCGcGUUGUG-GGUCGACCucguaguagccuauGCCGCCa -3'
miRNA:   3'- ugaGC-CAACGCuCCGGUUGG--------------UGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 26437 0.67 0.534642
Target:  5'- gAUUCGuc-GCGgaGGGCCAACgcggccucgCACCGCCg -3'
miRNA:   3'- -UGAGCcaaCGC--UCCGGUUG---------GUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 12648 0.67 0.524267
Target:  5'- cCUCGGaaaUGcCGAGGUCGuugucgAgCGCCGCCc -3'
miRNA:   3'- uGAGCCa--AC-GCUCCGGU------UgGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 51208 0.67 0.524267
Target:  5'- -gUCGGccUUGCGGcccuucgcgccGGCCGcGCC-CCGCCa -3'
miRNA:   3'- ugAGCC--AACGCU-----------CCGGU-UGGuGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 45448 0.67 0.524267
Target:  5'- gACUC----GCGAGGuCCGcACCGCCGCa -3'
miRNA:   3'- -UGAGccaaCGCUCC-GGU-UGGUGGCGg -5'
18973 3' -58.1 NC_004683.1 + 44941 0.67 0.513969
Target:  5'- cACUCGGccuccagGCcGGGCC-ACCACgGCg -3'
miRNA:   3'- -UGAGCCaa-----CGcUCCGGuUGGUGgCGg -5'
18973 3' -58.1 NC_004683.1 + 8949 0.67 0.513969
Target:  5'- cGCU-GGUggagcugcccgGCGAGGCCGACggauuaGCCaGCCg -3'
miRNA:   3'- -UGAgCCAa----------CGCUCCGGUUGg-----UGG-CGG- -5'
18973 3' -58.1 NC_004683.1 + 10856 0.67 0.513969
Target:  5'- cCUCGGagugaUGgGuGGCCGAUUGCuCGCCa -3'
miRNA:   3'- uGAGCCa----ACgCuCCGGUUGGUG-GCGG- -5'
18973 3' -58.1 NC_004683.1 + 25112 0.67 0.513969
Target:  5'- aACcCGGcgGCGuuGCCGguccugGCCGCCGUCa -3'
miRNA:   3'- -UGaGCCaaCGCucCGGU------UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 25207 0.67 0.513969
Target:  5'- cAC-CGGUgacgGCGgccAGGaCCGGCaaCGCCGCCg -3'
miRNA:   3'- -UGaGCCAa---CGC---UCC-GGUUG--GUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 56874 0.67 0.503755
Target:  5'- --gCGGgcaugGUGaAGGCCcccGACCugCGCCg -3'
miRNA:   3'- ugaGCCaa---CGC-UCCGG---UUGGugGCGG- -5'
18973 3' -58.1 NC_004683.1 + 37827 0.67 0.503755
Target:  5'- uACUCGGcUGauGGGCUugugacGCgGCCGCCu -3'
miRNA:   3'- -UGAGCCaACgcUCCGGu-----UGgUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 32798 0.68 0.47268
Target:  5'- aACUCcgaaGUcGCG-GGCCAgccggcgcgagcuGCCACUGCCa -3'
miRNA:   3'- -UGAGc---CAaCGCuCCGGU-------------UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 23985 0.68 0.463839
Target:  5'- cCUCGGc-GCGAucaCCAcGCCACCGCCc -3'
miRNA:   3'- uGAGCCaaCGCUcc-GGU-UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 12009 0.68 0.457993
Target:  5'- aGC-CGGUaucgacGCG-GGCCAgcgcgcccgcgcgggGCUACCGCCg -3'
miRNA:   3'- -UGaGCCAa-----CGCuCCGGU---------------UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 22193 0.68 0.454118
Target:  5'- ---gGGUUGCGcgGGGCgGGCgacgaGCCGCCa -3'
miRNA:   3'- ugagCCAACGC--UCCGgUUGg----UGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 2876 0.68 0.451223
Target:  5'- cCUCGGUguaGAGguaaccgaccuugcGCCAaccgaguugGCCGCCGCCg -3'
miRNA:   3'- uGAGCCAacgCUC--------------CGGU---------UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 23810 0.68 0.444509
Target:  5'- -gUCGGcgcCGGGGUgguGCCGCCGCCg -3'
miRNA:   3'- ugAGCCaacGCUCCGgu-UGGUGGCGG- -5'
18973 3' -58.1 NC_004683.1 + 51671 0.68 0.444509
Target:  5'- aGCUCGGccugGCGAcGGUCGAgC-CCGUCg -3'
miRNA:   3'- -UGAGCCaa--CGCU-CCGGUUgGuGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.