Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18974 | 3' | -58.1 | NC_004683.1 | + | 6665 | 0.68 | 0.425769 |
Target: 5'- cCGUGCUggccGCGGCGCGCcgcuGGuguggcugGCACGUGu -3' miRNA: 3'- uGCGCGA----UGUCGCGCGu---CC--------UGUGCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 17952 | 0.68 | 0.425769 |
Target: 5'- aACGCGCUGCGGCGUccccgGCccgcccgguuGGGugACaGUGa -3' miRNA: 3'- -UGCGCGAUGUCGCG-----CG----------UCCugUG-CAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 44431 | 0.68 | 0.416376 |
Target: 5'- cGCGCGC-ACAacGCGCGCAGcGCGCc-- -3' miRNA: 3'- -UGCGCGaUGU--CGCGCGUCcUGUGcau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 54344 | 0.68 | 0.407111 |
Target: 5'- aACGCGggGCGGUuCGguGGGCAUGUu -3' miRNA: 3'- -UGCGCgaUGUCGcGCguCCUGUGCAu -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 11707 | 0.68 | 0.397977 |
Target: 5'- -aGCGCUGCAGCGgcaCGCcgacgguuGGGACACc-- -3' miRNA: 3'- ugCGCGAUGUCGC---GCG--------UCCUGUGcau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 35072 | 0.69 | 0.380107 |
Target: 5'- cCGUGCUACAGacaGCAGGAcCGCGa- -3' miRNA: 3'- uGCGCGAUGUCgcgCGUCCU-GUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 24725 | 0.69 | 0.371376 |
Target: 5'- gGCGCGCgaacucgGCGGCcuggGCGCcGGugACGUc -3' miRNA: 3'- -UGCGCGa------UGUCG----CGCGuCCugUGCAu -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 4049 | 0.69 | 0.37051 |
Target: 5'- cGCGCGCUACcacguGCGCGCcgcccucGGGugcgaGCACGg- -3' miRNA: 3'- -UGCGCGAUGu----CGCGCG-------UCC-----UGUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 12766 | 0.69 | 0.354328 |
Target: 5'- uACGCGCaGCAGgGCuacggcuacccgGCGGGAUACGc- -3' miRNA: 3'- -UGCGCGaUGUCgCG------------CGUCCUGUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 12339 | 0.69 | 0.346014 |
Target: 5'- gGCGCGCaACAGCGuCGagucGGCGCGUAu -3' miRNA: 3'- -UGCGCGaUGUCGC-GCguc-CUGUGCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 40319 | 0.7 | 0.299097 |
Target: 5'- cGCGCGcCUGCAGCucgGCGCGGGccugcucgGCGuCGUAg -3' miRNA: 3'- -UGCGC-GAUGUCG---CGCGUCC--------UGU-GCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 14491 | 0.7 | 0.296885 |
Target: 5'- aACcCGUUGuCGGCGCGCAGGACcaaggucagcuccuGCGUGc -3' miRNA: 3'- -UGcGCGAU-GUCGCGCGUCCUG--------------UGCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 40077 | 0.71 | 0.285303 |
Target: 5'- gACGCGCUGuucgcccgggccCAGCGCGCcuugacagaccagccGGACGCGg- -3' miRNA: 3'- -UGCGCGAU------------GUCGCGCGu--------------CCUGUGCau -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 56380 | 0.72 | 0.22033 |
Target: 5'- gACG-GCgUGCAGUGUGCGGGGCGCaGUGa -3' miRNA: 3'- -UGCgCG-AUGUCGCGCGUCCUGUG-CAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 51258 | 0.73 | 0.214634 |
Target: 5'- gGCGCGUUcucgGCGGCGCGCcGGAuccaguuccgcCACGUGg -3' miRNA: 3'- -UGCGCGA----UGUCGCGCGuCCU-----------GUGCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 40162 | 0.73 | 0.20362 |
Target: 5'- gGCGCGCUgggcccgggcgaACAGCGCGUc-GACGCGUu -3' miRNA: 3'- -UGCGCGA------------UGUCGCGCGucCUGUGCAu -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 12697 | 0.73 | 0.200413 |
Target: 5'- gGCGgGCacgGCauccucggcauccucGGCGCGCGGGGCGCGUu -3' miRNA: 3'- -UGCgCGa--UG---------------UCGCGCGUCCUGUGCAu -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 44512 | 0.76 | 0.132029 |
Target: 5'- gGCGCGCUGCGcgcguuguGCGCGCGacgacuucGGugGCGUAu -3' miRNA: 3'- -UGCGCGAUGU--------CGCGCGU--------CCugUGCAU- -5' |
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18974 | 3' | -58.1 | NC_004683.1 | + | 56256 | 1.06 | 0.000809 |
Target: 5'- aACGCGCUACAGCGCGCAGGACACGUAc -3' miRNA: 3'- -UGCGCGAUGUCGCGCGUCCUGUGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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