miRNA display CGI


Results 21 - 40 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 3' -58.3 NC_004683.1 + 49352 0.66 0.609702
Target:  5'- gUGuGCCGCGACGuCGuCGG--GCAGCg -3'
miRNA:   3'- aGC-CGGUGCUGCuGCuGCUggCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 5322 0.66 0.609702
Target:  5'- -aGGUaCGcCGGCGACGACG-UCGCcaGGCa -3'
miRNA:   3'- agCCG-GU-GCUGCUGCUGCuGGCG--UCG- -5'
18976 3' -58.3 NC_004683.1 + 20693 0.66 0.609702
Target:  5'- gCGGUgACGAUGAC--UGACCGCGu- -3'
miRNA:   3'- aGCCGgUGCUGCUGcuGCUGGCGUcg -5'
18976 3' -58.3 NC_004683.1 + 41176 0.66 0.609702
Target:  5'- cCGGCCGUGGCaGCGGCGcgggGCCGCu-- -3'
miRNA:   3'- aGCCGGUGCUGcUGCUGC----UGGCGucg -5'
18976 3' -58.3 NC_004683.1 + 47587 0.66 0.609702
Target:  5'- aCGGCUGCGugG-CGGCGuucggGCCGaugcuGCa -3'
miRNA:   3'- aGCCGGUGCugCuGCUGC-----UGGCgu---CG- -5'
18976 3' -58.3 NC_004683.1 + 4927 0.66 0.609702
Target:  5'- aUCGGCaagccucaGA--GCGGCGGCCaGCGGCg -3'
miRNA:   3'- -AGCCGgug-----CUgcUGCUGCUGG-CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 30036 0.66 0.608646
Target:  5'- aUCGGaUCugGACGGuugccccauccacCGACGAuCCaCAGCa -3'
miRNA:   3'- -AGCC-GGugCUGCU-------------GCUGCU-GGcGUCG- -5'
18976 3' -58.3 NC_004683.1 + 12415 0.66 0.603363
Target:  5'- cUGGCCACcGCGcgccagcaggucACGAUGGCCGaacgucaguaugucuCAGCg -3'
miRNA:   3'- aGCCGGUGcUGC------------UGCUGCUGGC---------------GUCG- -5'
18976 3' -58.3 NC_004683.1 + 9469 0.66 0.599141
Target:  5'- cUCGGCgACGGCGagGCGugGGa-GCuGCc -3'
miRNA:   3'- -AGCCGgUGCUGC--UGCugCUggCGuCG- -5'
18976 3' -58.3 NC_004683.1 + 51450 0.66 0.599141
Target:  5'- gCGGUCGuCGAgGAUGGCGGCCaucuugAGCa -3'
miRNA:   3'- aGCCGGU-GCUgCUGCUGCUGGcg----UCG- -5'
18976 3' -58.3 NC_004683.1 + 3578 0.66 0.599141
Target:  5'- gCGGCCACcacCGAUucCGGCuCGUAGCc -3'
miRNA:   3'- aGCCGGUGcu-GCUGcuGCUG-GCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 7831 0.66 0.599141
Target:  5'- gUGGagauCGACGACGGCGAguuCCGCcGUg -3'
miRNA:   3'- aGCCggu-GCUGCUGCUGCU---GGCGuCG- -5'
18976 3' -58.3 NC_004683.1 + 23053 0.66 0.599141
Target:  5'- cUCGGUguCGGCcugcuCGGCGGCCuGguGCu -3'
miRNA:   3'- -AGCCGguGCUGcu---GCUGCUGG-CguCG- -5'
18976 3' -58.3 NC_004683.1 + 21775 0.66 0.599141
Target:  5'- gCGGCCAcCGAUGGuugguCGgguACGGCCacggGCGGCg -3'
miRNA:   3'- aGCCGGU-GCUGCU-----GC---UGCUGG----CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 1355 0.66 0.599141
Target:  5'- gUUGGCCAUGAUGAUGuacuCGcGCuuguccauugCGCAGCc -3'
miRNA:   3'- -AGCCGGUGCUGCUGCu---GC-UG----------GCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 28641 0.66 0.599141
Target:  5'- aCGGCCgagacuugGCGGCGcuCGGCGugccgucuccuACCGCGGa -3'
miRNA:   3'- aGCCGG--------UGCUGCu-GCUGC-----------UGGCGUCg -5'
18976 3' -58.3 NC_004683.1 + 22021 0.66 0.591764
Target:  5'- gCGGCCGCaccgccaccgccgGGCGGauugccgggauugccCGACGcACCaGCAGCc -3'
miRNA:   3'- aGCCGGUG-------------CUGCU---------------GCUGC-UGG-CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 18636 0.66 0.588607
Target:  5'- cUGGcCCugGugGGguucuucgugccCGGCGACCucgguGCGGCg -3'
miRNA:   3'- aGCC-GGugCugCU------------GCUGCUGG-----CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 13864 0.66 0.588607
Target:  5'- -aGGaCCGCGcCGGCGcUGACaucaCGCGGCa -3'
miRNA:   3'- agCC-GGUGCuGCUGCuGCUG----GCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 32494 0.66 0.588607
Target:  5'- cUUGGCCACGcguCGAaGGCGuucacGCUGCAGa -3'
miRNA:   3'- -AGCCGGUGCu--GCUgCUGC-----UGGCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.