miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 5' -56.4 NC_004683.1 + 52563 0.67 0.610819
Target:  5'- uGGUCgaucugaCCGAGCAgauCCGGCGcgugGuCAACCg -3'
miRNA:   3'- uCCAG-------GGCUCGU---GGUCGCaa--C-GUUGG- -5'
18976 5' -56.4 NC_004683.1 + 18897 0.67 0.601016
Target:  5'- gAGGcggCCCGGgaguucgugcGCACCGuCG-UGCAACCg -3'
miRNA:   3'- -UCCa--GGGCU----------CGUGGUcGCaACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 13954 0.67 0.601016
Target:  5'- gAGGUgCCGcgugaugucAGCGCCGGCGcgguccucgGUGGCCu -3'
miRNA:   3'- -UCCAgGGC---------UCGUGGUCGCaa-------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 46490 0.67 0.594492
Target:  5'- uGGUCgaCGGGCACCGguacacguacugggcGCGguaGCGGCCc -3'
miRNA:   3'- uCCAGg-GCUCGUGGU---------------CGCaa-CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 30899 0.67 0.587979
Target:  5'- gAGGUCaucgauuCCGAGCugCgcgcacugacGGCGUUccgggcggcgugcGCAGCCg -3'
miRNA:   3'- -UCCAG-------GGCUCGugG----------UCGCAA-------------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 13796 0.67 0.579315
Target:  5'- cAGG--CCGcGCACCGGCGaaaccggaUGCGACCu -3'
miRNA:   3'- -UCCagGGCuCGUGGUCGCa-------ACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 21923 0.67 0.579315
Target:  5'- cGGGcaaUCCCG-GCAauccgcCCGGCGguggcggGCGGCCg -3'
miRNA:   3'- -UCC---AGGGCuCGU------GGUCGCaa-----CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 13004 0.67 0.568525
Target:  5'- cGGcuuccUgCCGGGCGCCGGUGgccccgGCGACUu -3'
miRNA:   3'- uCC-----AgGGCUCGUGGUCGCaa----CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 41081 0.67 0.568525
Target:  5'- gGGGUCCgcaguccagacgCGGGUAgCAGCGgcgaugcgcGCGGCCa -3'
miRNA:   3'- -UCCAGG------------GCUCGUgGUCGCaa-------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 39079 0.68 0.546041
Target:  5'- -cGUCUCGAGCAgguagucacguacCCGGCGg-GCGACUg -3'
miRNA:   3'- ucCAGGGCUCGU-------------GGUCGCaaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 10987 0.68 0.536491
Target:  5'- gAGGUCCUGcacCugCAGUGUcUGCAgACCa -3'
miRNA:   3'- -UCCAGGGCuc-GugGUCGCA-ACGU-UGG- -5'
18976 5' -56.4 NC_004683.1 + 52485 0.68 0.525948
Target:  5'- aGGGUCUCGcGCGCUGGCucgGCAAgCa -3'
miRNA:   3'- -UCCAGGGCuCGUGGUCGcaaCGUUgG- -5'
18976 5' -56.4 NC_004683.1 + 18634 0.68 0.525948
Target:  5'- cGGUgUCGgcaggcugauGGCGCCGGUuggGUUGUAACCa -3'
miRNA:   3'- uCCAgGGC----------UCGUGGUCG---CAACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 39392 0.68 0.524899
Target:  5'- cGGUCCCcugaaacGAGCAUCcccuuGCGgcGCAACa -3'
miRNA:   3'- uCCAGGG-------CUCGUGGu----CGCaaCGUUGg -5'
18976 5' -56.4 NC_004683.1 + 15327 0.68 0.515485
Target:  5'- aAGGaCCU---CACCAGCGUUGC-GCCg -3'
miRNA:   3'- -UCCaGGGcucGUGGUCGCAACGuUGG- -5'
18976 5' -56.4 NC_004683.1 + 48696 0.68 0.515485
Target:  5'- cGGaGUCCgCGGGC-CCAGuCGgggUGCAucgGCCg -3'
miRNA:   3'- -UC-CAGG-GCUCGuGGUC-GCa--ACGU---UGG- -5'
18976 5' -56.4 NC_004683.1 + 14855 0.68 0.515485
Target:  5'- --aUCCCagGAGcCAUCGGgGUUGCGGCCc -3'
miRNA:   3'- uccAGGG--CUC-GUGGUCgCAACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 31898 0.68 0.514443
Target:  5'- cGG-CUCGGGCcggugcaGCCAGCGggGCGAgCu -3'
miRNA:   3'- uCCaGGGCUCG-------UGGUCGCaaCGUUgG- -5'
18976 5' -56.4 NC_004683.1 + 20406 0.69 0.491752
Target:  5'- cGGcgcaCCCGgggcggccaacggcGGCACCGGCGgUGCAgggGCCa -3'
miRNA:   3'- uCCa---GGGC--------------UCGUGGUCGCaACGU---UGG- -5'
18976 5' -56.4 NC_004683.1 + 23698 0.69 0.488693
Target:  5'- cGGGUUCuCGAcguuccgccgcggcgGCACCGGCGgcgGCAccACCc -3'
miRNA:   3'- -UCCAGG-GCU---------------CGUGGUCGCaa-CGU--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.