Results 1 - 20 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 65735 | 0.68 | 0.687174 |
Target: 5'- gACCGGGuaggucGGGACcGGAGCUgc-GCGCg -3' miRNA: 3'- -UGGCUCu-----UCUUGcCCUCGAacuCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 63291 | 0.71 | 0.535196 |
Target: 5'- gGCCGAGAAGAugGGGccGUUcGGcCGCg -3' miRNA: 3'- -UGGCUCUUCUugCCCu-CGAaCUcGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 62806 | 0.66 | 0.83732 |
Target: 5'- uGCCGGGcAGGcGgGGGAGCUUucaggccgaccGGGUGUc -3' miRNA: 3'- -UGGCUC-UUCuUgCCCUCGAA-----------CUCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 62016 | 0.7 | 0.56621 |
Target: 5'- -gCGAcGGGGACGGGGGCcacggggUUGAGCGg -3' miRNA: 3'- ugGCUcUUCUUGCCCUCG-------AACUCGCg -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 59693 | 0.7 | 0.567289 |
Target: 5'- cGCCGAGcuGcGCGGGGuGCggGuGCGCa -3' miRNA: 3'- -UGGCUCuuCuUGCCCU-CGaaCuCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 57358 | 0.7 | 0.567289 |
Target: 5'- cGCCGGuGAGGGCGGGGuCUUuuGCGCg -3' miRNA: 3'- -UGGCUcUUCUUGCCCUcGAAcuCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 53363 | 0.66 | 0.79863 |
Target: 5'- cCCGGu--GggUGGGAGCcgaugacaccgGAGCGCg -3' miRNA: 3'- uGGCUcuuCuuGCCCUCGaa---------CUCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 52894 | 0.68 | 0.708692 |
Target: 5'- cACCGAGGAGGagcGCGaGGAGaaccgccAGCGCc -3' miRNA: 3'- -UGGCUCUUCU---UGC-CCUCgaac---UCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 49127 | 0.68 | 0.708692 |
Target: 5'- uGCCGAGGAGGA--GGAGCcu--GCGCc -3' miRNA: 3'- -UGGCUCUUCUUgcCCUCGaacuCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 47103 | 0.69 | 0.654532 |
Target: 5'- uGCCGGGAc--GCGGGGGUccggcaGAGCGUg -3' miRNA: 3'- -UGGCUCUucuUGCCCUCGaa----CUCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 44630 | 0.72 | 0.503765 |
Target: 5'- cGCCGGGggGAGCGGGuacucGGCccacuGCGUc -3' miRNA: 3'- -UGGCUCuuCUUGCCC-----UCGaacu-CGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 43517 | 0.69 | 0.676331 |
Target: 5'- -gCGGcAGGGGCGGGAGCggUGGcuGCGCc -3' miRNA: 3'- ugGCUcUUCUUGCCCUCGa-ACU--CGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 40720 | 0.69 | 0.665447 |
Target: 5'- gGCCGGGAcGAccagcgcgGCGGGGGCgguGGCGg -3' miRNA: 3'- -UGGCUCUuCU--------UGCCCUCGaacUCGCg -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 35532 | 0.7 | 0.621704 |
Target: 5'- cACCGAGugcGGGcACGaGGAGCcgcgaUGAGCGUc -3' miRNA: 3'- -UGGCUCu--UCU-UGC-CCUCGa----ACUCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 35416 | 0.68 | 0.697964 |
Target: 5'- cGCCGAGGAGcGCGGGAGgCgaugGuccCGCc -3' miRNA: 3'- -UGGCUCUUCuUGCCCUC-Gaa--Cuc-GCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 33857 | 0.69 | 0.662175 |
Target: 5'- cGCCGAGAucccguuguagcugAGGuCGGGGGCguccUGGccGCGCu -3' miRNA: 3'- -UGGCUCU--------------UCUuGCCCUCGa---ACU--CGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 20168 | 0.74 | 0.396549 |
Target: 5'- gUCGGGGuuGAACGccAGCUUGAGCGCg -3' miRNA: 3'- uGGCUCUu-CUUGCccUCGAACUCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 19703 | 0.68 | 0.740384 |
Target: 5'- gGCCGAGccAAGAccUGGGAcgGCcacucggUGAGCGCg -3' miRNA: 3'- -UGGCUC--UUCUu-GCCCU--CGa------ACUCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 19335 | 0.66 | 0.828424 |
Target: 5'- cGCCGuGGccGAGCGGGAggcGCUgauccagcGGCGCa -3' miRNA: 3'- -UGGC-UCuuCUUGCCCU---CGAac------UCGCG- -5' |
|||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 16769 | 0.68 | 0.719345 |
Target: 5'- cGCgGGGAuGAGCGGGgaccaggugcGGCgcgucguguggUGGGCGCg -3' miRNA: 3'- -UGgCUCUuCUUGCCC----------UCGa----------ACUCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home