Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18977 | 5' | -54.1 | NC_004684.1 | + | 20168 | 0.74 | 0.396549 |
Target: 5'- gUCGGGGuuGAACGccAGCUUGAGCGCg -3' miRNA: 3'- uGGCUCUu-CUUGCccUCGAACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 1448 | 1.12 | 0.001005 |
Target: 5'- cACCGAGAAGAACGGGAGCUUGAGCGCg -3' miRNA: 3'- -UGGCUCUUCUUGCCCUCGAACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 7004 | 0.66 | 0.810027 |
Target: 5'- gACCaGGuAGAGCGGGAugucGCgcaGGCGCa -3' miRNA: 3'- -UGGcUCuUCUUGCCCU----CGaacUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 53363 | 0.66 | 0.79863 |
Target: 5'- cCCGGu--GggUGGGAGCcgaugacaccgGAGCGCg -3' miRNA: 3'- uGGCUcuuCuuGCCCUCGaa---------CUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 49127 | 0.68 | 0.708692 |
Target: 5'- uGCCGAGGAGGA--GGAGCcu--GCGCc -3' miRNA: 3'- -UGGCUCUUCUUgcCCUCGaacuCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 52894 | 0.68 | 0.708692 |
Target: 5'- cACCGAGGAGGagcGCGaGGAGaaccgccAGCGCc -3' miRNA: 3'- -UGGCUCUUCU---UGC-CCUCgaac---UCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 3168 | 0.75 | 0.336423 |
Target: 5'- aACCGGGAgcacGGAGCGGGGGUcgaucaucGGCGCg -3' miRNA: 3'- -UGGCUCU----UCUUGCCCUCGaac-----UCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 4106 | 0.67 | 0.771103 |
Target: 5'- uGCCGGu--GAACGGcAGCagguggUGGGCGCa -3' miRNA: 3'- -UGGCUcuuCUUGCCcUCGa-----ACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 65735 | 0.68 | 0.687174 |
Target: 5'- gACCGGGuaggucGGGACcGGAGCUgc-GCGCg -3' miRNA: 3'- -UGGCUCu-----UCUUGcCCUCGAacuCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 63291 | 0.71 | 0.535196 |
Target: 5'- gGCCGAGAAGAugGGGccGUUcGGcCGCg -3' miRNA: 3'- -UGGCUCUUCUugCCCu-CGAaCUcGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 33857 | 0.69 | 0.662175 |
Target: 5'- cGCCGAGAucccguuguagcugAGGuCGGGGGCguccUGGccGCGCu -3' miRNA: 3'- -UGGCUCU--------------UCUuGCCCUCGa---ACU--CGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 5157 | 0.66 | 0.83732 |
Target: 5'- cACCGGGucuggaucAGGAucgUGGGAGCgccGGGUGCc -3' miRNA: 3'- -UGGCUC--------UUCUu--GCCCUCGaa-CUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 62016 | 0.7 | 0.56621 |
Target: 5'- -gCGAcGGGGACGGGGGCcacggggUUGAGCGg -3' miRNA: 3'- ugGCUcUUCUUGCCCUCG-------AACUCGCg -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 35532 | 0.7 | 0.621704 |
Target: 5'- cACCGAGugcGGGcACGaGGAGCcgcgaUGAGCGUc -3' miRNA: 3'- -UGGCUCu--UCU-UGC-CCUCGa----ACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 12143 | 0.67 | 0.76099 |
Target: 5'- aGCCGAcugcugGAAGGACGuGGcuaauGGCgugUGGGUGCc -3' miRNA: 3'- -UGGCU------CUUCUUGC-CC-----UCGa--ACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 4301 | 0.67 | 0.76099 |
Target: 5'- cACaCGAGuGGGACGcGGuGCaccGGGCGCa -3' miRNA: 3'- -UG-GCUCuUCUUGC-CCuCGaa-CUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 19703 | 0.68 | 0.740384 |
Target: 5'- gGCCGAGccAAGAccUGGGAcgGCcacucggUGAGCGCg -3' miRNA: 3'- -UGGCUC--UUCUu-GCCCU--CGa------ACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 16769 | 0.68 | 0.719345 |
Target: 5'- cGCgGGGAuGAGCGGGgaccaggugcGGCgcgucguguggUGGGCGCg -3' miRNA: 3'- -UGgCUCUuCUUGCCC----------UCGa----------ACUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 47103 | 0.69 | 0.654532 |
Target: 5'- uGCCGGGAc--GCGGGGGUccggcaGAGCGUg -3' miRNA: 3'- -UGGCUCUucuUGCCCUCGaa----CUCGCG- -5' |
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18977 | 5' | -54.1 | NC_004684.1 | + | 43517 | 0.69 | 0.676331 |
Target: 5'- -gCGGcAGGGGCGGGAGCggUGGcuGCGCc -3' miRNA: 3'- ugGCUcUUCUUGCCCUCGa-ACU--CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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