miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 5' -54.1 NC_004684.1 + 53363 0.66 0.79863
Target:  5'- cCCGGu--GggUGGGAGCcgaugacaccgGAGCGCg -3'
miRNA:   3'- uGGCUcuuCuuGCCCUCGaa---------CUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 4106 0.67 0.771103
Target:  5'- uGCCGGu--GAACGGcAGCagguggUGGGCGCa -3'
miRNA:   3'- -UGGCUcuuCUUGCCcUCGa-----ACUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 49127 0.68 0.708692
Target:  5'- uGCCGAGGAGGA--GGAGCcu--GCGCc -3'
miRNA:   3'- -UGGCUCUUCUUgcCCUCGaacuCGCG- -5'
18977 5' -54.1 NC_004684.1 + 52894 0.68 0.708692
Target:  5'- cACCGAGGAGGagcGCGaGGAGaaccgccAGCGCc -3'
miRNA:   3'- -UGGCUCUUCU---UGC-CCUCgaac---UCGCG- -5'
18977 5' -54.1 NC_004684.1 + 65735 0.68 0.687174
Target:  5'- gACCGGGuaggucGGGACcGGAGCUgc-GCGCg -3'
miRNA:   3'- -UGGCUCu-----UCUUGcCCUCGAacuCGCG- -5'
18977 5' -54.1 NC_004684.1 + 33857 0.69 0.662175
Target:  5'- cGCCGAGAucccguuguagcugAGGuCGGGGGCguccUGGccGCGCu -3'
miRNA:   3'- -UGGCUCU--------------UCUuGCCCUCGa---ACU--CGCG- -5'
18977 5' -54.1 NC_004684.1 + 63291 0.71 0.535196
Target:  5'- gGCCGAGAAGAugGGGccGUUcGGcCGCg -3'
miRNA:   3'- -UGGCUCUUCUugCCCu-CGAaCUcGCG- -5'
18977 5' -54.1 NC_004684.1 + 20168 0.74 0.396549
Target:  5'- gUCGGGGuuGAACGccAGCUUGAGCGCg -3'
miRNA:   3'- uGGCUCUu-CUUGCccUCGAACUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 3168 0.75 0.336423
Target:  5'- aACCGGGAgcacGGAGCGGGGGUcgaucaucGGCGCg -3'
miRNA:   3'- -UGGCUCU----UCUUGCCCUCGaac-----UCGCG- -5'
18977 5' -54.1 NC_004684.1 + 1448 1.12 0.001005
Target:  5'- cACCGAGAAGAACGGGAGCUUGAGCGCg -3'
miRNA:   3'- -UGGCUCUUCUUGCCCUCGAACUCGCG- -5'
18977 5' -54.1 NC_004684.1 + 5157 0.66 0.83732
Target:  5'- cACCGGGucuggaucAGGAucgUGGGAGCgccGGGUGCc -3'
miRNA:   3'- -UGGCUC--------UUCUu--GCCCUCGaa-CUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.