miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 24538 0.68 0.447218
Target:  5'- -uACGGCGGUGUGCCG--GGCCgCGa -3'
miRNA:   3'- guUGUCGUCGCGCGGCuaCCGGaGCc -5'
18978 3' -58.7 NC_004684.1 + 24566 0.7 0.350536
Target:  5'- cCGGCGGUAGCGCGCUGAucUGGagcUGGa -3'
miRNA:   3'- -GUUGUCGUCGCGCGGCU--ACCggaGCC- -5'
18978 3' -58.7 NC_004684.1 + 24731 0.68 0.45577
Target:  5'- -uGCAGU-GCGCGCCGGaacgcguagacguUGGCCU-GGc -3'
miRNA:   3'- guUGUCGuCGCGCGGCU-------------ACCGGAgCC- -5'
18978 3' -58.7 NC_004684.1 + 24842 0.72 0.269664
Target:  5'- gCGGCAGCGGUaGCGCCaccgGGCCguUCGGc -3'
miRNA:   3'- -GUUGUCGUCG-CGCGGcua-CCGG--AGCC- -5'
18978 3' -58.7 NC_004684.1 + 25306 0.71 0.314003
Target:  5'- gCGGCGGCGGUucgucggcccuggcgGCGuauggcggccuccCCGGUGGCCUUGGc -3'
miRNA:   3'- -GUUGUCGUCG---------------CGC-------------GGCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 25402 0.66 0.571611
Target:  5'- aCAGCGGCGGCcaguaccaaugggguGCcuccgaccuuGCCGcUGGCCugUCGGa -3'
miRNA:   3'- -GUUGUCGUCG---------------CG----------CGGCuACCGG--AGCC- -5'
18978 3' -58.7 NC_004684.1 + 25592 0.67 0.526058
Target:  5'- gAACAGCcGCuCGCCGGucgccUGGCCcUGGu -3'
miRNA:   3'- gUUGUCGuCGcGCGGCU-----ACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 25783 0.66 0.574756
Target:  5'- cCAcCGGCGGCaCGCCGGuguucgucaccaacUGGCCggguggCGGc -3'
miRNA:   3'- -GUuGUCGUCGcGCGGCU--------------ACCGGa-----GCC- -5'
18978 3' -58.7 NC_004684.1 + 26424 0.77 0.120584
Target:  5'- uGGCAGCGGgguuCGcCGCCGGUGGCC-CGGu -3'
miRNA:   3'- gUUGUCGUC----GC-GCGGCUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 26512 0.75 0.17922
Target:  5'- cCGGCGGCgaaccccgcugccAGCGCGCCGGUGGCggCGu -3'
miRNA:   3'- -GUUGUCG-------------UCGCGCGGCUACCGgaGCc -5'
18978 3' -58.7 NC_004684.1 + 26782 0.69 0.426696
Target:  5'- gAGCAGCA-CGCGCaccagcagguugaCGAUGGCCccgaggaUCGGc -3'
miRNA:   3'- gUUGUCGUcGCGCG-------------GCUACCGG-------AGCC- -5'
18978 3' -58.7 NC_004684.1 + 26829 0.74 0.204516
Target:  5'- aCGACAcCAGCGCGCUGGUGGaCCggUCGa -3'
miRNA:   3'- -GUUGUcGUCGCGCGGCUACC-GG--AGCc -5'
18978 3' -58.7 NC_004684.1 + 27017 0.66 0.609566
Target:  5'- uCAACAGCcaGGCaccggGUGCCGGUGGCaUUGu -3'
miRNA:   3'- -GUUGUCG--UCG-----CGCGGCUACCGgAGCc -5'
18978 3' -58.7 NC_004684.1 + 27469 0.73 0.244219
Target:  5'- gAGCAcGCgcuccGGCGCGauGGUGGCCUUGGg -3'
miRNA:   3'- gUUGU-CG-----UCGCGCggCUACCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 27619 0.66 0.598984
Target:  5'- cCAACAGCucaCGCG-UGGUGGCgcacCUCGGu -3'
miRNA:   3'- -GUUGUCGuc-GCGCgGCUACCG----GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 27993 0.69 0.391732
Target:  5'- --uCGGCGGCGUcugggugaugcagGUCGAUGGCCU-GGa -3'
miRNA:   3'- guuGUCGUCGCG-------------CGGCUACCGGAgCC- -5'
18978 3' -58.7 NC_004684.1 + 28037 0.67 0.536304
Target:  5'- cCGGCAG-AGCGCgagaucauGCCGGUGGUCggccccggCGGu -3'
miRNA:   3'- -GUUGUCgUCGCG--------CGGCUACCGGa-------GCC- -5'
18978 3' -58.7 NC_004684.1 + 29407 0.71 0.326876
Target:  5'- uCAGCGGCGuGCGCGUcuugCGGUaguaGGCaCUCGGg -3'
miRNA:   3'- -GUUGUCGU-CGCGCG----GCUA----CCG-GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 30182 0.68 0.456726
Target:  5'- --uCGGCGGCGaGCUGGUGGCCa--- -3'
miRNA:   3'- guuGUCGUCGCgCGGCUACCGGagcc -5'
18978 3' -58.7 NC_004684.1 + 31164 0.7 0.374541
Target:  5'- cCGGCGGCGGUGCuggGCCaGAUcgggcaaGGCCUCGu -3'
miRNA:   3'- -GUUGUCGUCGCG---CGG-CUA-------CCGGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.