miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 56395 0.73 0.250387
Target:  5'- gGACAuGCAGCGCGCCaacuaccgGGCCaugcucUCGGg -3'
miRNA:   3'- gUUGU-CGUCGCGCGGcua-----CCGG------AGCC- -5'
18978 3' -58.7 NC_004684.1 + 56178 0.66 0.609566
Target:  5'- aCGACGGCGGCGCuaUCGAgcGCC-CGGu -3'
miRNA:   3'- -GUUGUCGUCGCGc-GGCUacCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 55786 0.71 0.297203
Target:  5'- uCGAUGGCGGCGUGaCCgGGUGGUC-CGGu -3'
miRNA:   3'- -GUUGUCGUCGCGC-GG-CUACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 55755 0.7 0.366973
Target:  5'- cCAGCAGCuGGUGCGCCGccaGGcCCUCc- -3'
miRNA:   3'- -GUUGUCG-UCGCGCGGCua-CC-GGAGcc -5'
18978 3' -58.7 NC_004684.1 + 55528 0.68 0.436888
Target:  5'- cCAugAGCGGacaaccacgaacuCGCGCCGcUGGCCgccgUGGc -3'
miRNA:   3'- -GUugUCGUC-------------GCGCGGCuACCGGa---GCC- -5'
18978 3' -58.7 NC_004684.1 + 55433 0.78 0.108182
Target:  5'- cCAGCAGC-GUGCGCCGGUGGUCUauGu -3'
miRNA:   3'- -GUUGUCGuCGCGCGGCUACCGGAgcC- -5'
18978 3' -58.7 NC_004684.1 + 53272 0.66 0.577905
Target:  5'- --cCAGCGGCGCGgucggccuguccCCGGaGGCCUucacgcCGGa -3'
miRNA:   3'- guuGUCGUCGCGC------------GGCUaCCGGA------GCC- -5'
18978 3' -58.7 NC_004684.1 + 52810 0.67 0.525038
Target:  5'- gGACAGCgccuacgAGCGUGgCGA-GGCCgaCGGg -3'
miRNA:   3'- gUUGUCG-------UCGCGCgGCUaCCGGa-GCC- -5'
18978 3' -58.7 NC_004684.1 + 52252 0.66 0.598984
Target:  5'- aCAGCGGCGGUaCGUCGAagcUGGCgUUGu -3'
miRNA:   3'- -GUUGUCGUCGcGCGGCU---ACCGgAGCc -5'
18978 3' -58.7 NC_004684.1 + 52151 0.7 0.375388
Target:  5'- uGGCAGCGGCGgGCCGua-GCUgucCGGg -3'
miRNA:   3'- gUUGUCGUCGCgCGGCuacCGGa--GCC- -5'
18978 3' -58.7 NC_004684.1 + 52077 0.68 0.485879
Target:  5'- --cCGGCAGgGCG-CGAUGGCCgacaccgUGGc -3'
miRNA:   3'- guuGUCGUCgCGCgGCUACCGGa------GCC- -5'
18978 3' -58.7 NC_004684.1 + 51967 0.66 0.609566
Target:  5'- cCAGCAGCAGgGUgGCCac-GGUgUCGGc -3'
miRNA:   3'- -GUUGUCGUCgCG-CGGcuaCCGgAGCC- -5'
18978 3' -58.7 NC_004684.1 + 51906 0.75 0.18443
Target:  5'- cCAGC-GCAGCGCGCgCGGccUGGCCgUGGa -3'
miRNA:   3'- -GUUGuCGUCGCGCG-GCU--ACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 51327 0.68 0.476061
Target:  5'- -uGCGGCAuCGaccgGCCGAUGGCCaaGGu -3'
miRNA:   3'- guUGUCGUcGCg---CGGCUACCGGagCC- -5'
18978 3' -58.7 NC_004684.1 + 51279 0.69 0.428539
Target:  5'- -uACGGCcagGGCGCGCgGuccAUGGCC-CGGc -3'
miRNA:   3'- guUGUCG---UCGCGCGgC---UACCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 50027 0.72 0.269664
Target:  5'- uCGGCGGCAGCGUgGCCGGUG-CCU-GGc -3'
miRNA:   3'- -GUUGUCGUCGCG-CGGCUACcGGAgCC- -5'
18978 3' -58.7 NC_004684.1 + 49538 0.77 0.137944
Target:  5'- --cCGGCGGUGUGCgCGGUGGCCgacuUCGGg -3'
miRNA:   3'- guuGUCGUCGCGCG-GCUACCGG----AGCC- -5'
18978 3' -58.7 NC_004684.1 + 49499 0.74 0.215253
Target:  5'- -uGCAGCGGCGCGUCGggGGUguagCGGc -3'
miRNA:   3'- guUGUCGUCGCGCGGCuaCCGga--GCC- -5'
18978 3' -58.7 NC_004684.1 + 49442 0.68 0.437821
Target:  5'- gGACAGCcugGGCcugaucccgucaGCGCCGAccaUGGCCgccgaCGGg -3'
miRNA:   3'- gUUGUCG---UCG------------CGCGGCU---ACCGGa----GCC- -5'
18978 3' -58.7 NC_004684.1 + 49286 0.71 0.326876
Target:  5'- aCAcCGGCcuCGCGCuCGGUGGCCUUGc -3'
miRNA:   3'- -GUuGUCGucGCGCG-GCUACCGGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.