miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 5' -52.7 NC_004684.1 + 25365 0.66 0.89424
Target:  5'- gGCCGGaAGGC-CCUUGGugcgcaGCUucUCCAg -3'
miRNA:   3'- -UGGCC-UCCGuGGAGCUuua---UGA--AGGU- -5'
18978 5' -52.7 NC_004684.1 + 48973 0.66 0.89424
Target:  5'- gGCCGGggcGGGCGCgUCGGugcccUGCUggCCGg -3'
miRNA:   3'- -UGGCC---UCCGUGgAGCUuu---AUGAa-GGU- -5'
18978 5' -52.7 NC_004684.1 + 24191 0.66 0.879381
Target:  5'- uGCCGGGcugcGGCACCUUGAAGU---UCgGg -3'
miRNA:   3'- -UGGCCU----CCGUGGAGCUUUAugaAGgU- -5'
18978 5' -52.7 NC_004684.1 + 9806 0.66 0.871561
Target:  5'- cGCCGGuGGCACC-CGAc--GCUcaaggCCAc -3'
miRNA:   3'- -UGGCCuCCGUGGaGCUuuaUGAa----GGU- -5'
18978 5' -52.7 NC_004684.1 + 57004 0.66 0.871561
Target:  5'- cGCCGGGGacgagcGCGCCaUCGggGUGCgcuggUCg- -3'
miRNA:   3'- -UGGCCUC------CGUGG-AGCuuUAUGa----AGgu -5'
18978 5' -52.7 NC_004684.1 + 53527 0.67 0.828834
Target:  5'- cGCgGGGGGC-CCUCGGug-ACgUCCu -3'
miRNA:   3'- -UGgCCUCCGuGGAGCUuuaUGaAGGu -5'
18978 5' -52.7 NC_004684.1 + 25503 0.67 0.81021
Target:  5'- gUCGGAGGCACCcCauuGGUACUggCCGc -3'
miRNA:   3'- uGGCCUCCGUGGaGcu-UUAUGAa-GGU- -5'
18978 5' -52.7 NC_004684.1 + 8447 0.67 0.81021
Target:  5'- cGCCGGuGGGCAgCUCGAuGAUugUUUUc -3'
miRNA:   3'- -UGGCC-UCCGUgGAGCU-UUAugAAGGu -5'
18978 5' -52.7 NC_004684.1 + 13029 0.68 0.800608
Target:  5'- cACCGGGGGUGCCgacggcggCGAAGUugg-CCGa -3'
miRNA:   3'- -UGGCCUCCGUGGa-------GCUUUAugaaGGU- -5'
18978 5' -52.7 NC_004684.1 + 65826 0.68 0.790827
Target:  5'- cCCGGAGGCACCggCGGcucacaGGUGCa-CCGc -3'
miRNA:   3'- uGGCCUCCGUGGa-GCU------UUAUGaaGGU- -5'
18978 5' -52.7 NC_004684.1 + 52454 0.68 0.780878
Target:  5'- gGCUGGGacGGCACCaUCGAGucgGUGCUgcuggaUCCGa -3'
miRNA:   3'- -UGGCCU--CCGUGG-AGCUU---UAUGA------AGGU- -5'
18978 5' -52.7 NC_004684.1 + 9424 0.68 0.778869
Target:  5'- cACCGGAGGCcuCCUCGuccccg-UCCu -3'
miRNA:   3'- -UGGCCUCCGu-GGAGCuuuaugaAGGu -5'
18978 5' -52.7 NC_004684.1 + 58511 0.68 0.770773
Target:  5'- gGCCGGAGGCAacggCGggGUuccgGCggCCGg -3'
miRNA:   3'- -UGGCCUCCGUgga-GCuuUA----UGaaGGU- -5'
18978 5' -52.7 NC_004684.1 + 41726 0.69 0.718301
Target:  5'- cACCGGAGGCGaucuCCUCcuGGUAUUUCa- -3'
miRNA:   3'- -UGGCCUCCGU----GGAGcuUUAUGAAGgu -5'
18978 5' -52.7 NC_004684.1 + 67021 0.69 0.718301
Target:  5'- cGCCGGAGGC-CUUCgccGAGGUugUggccgCCAa -3'
miRNA:   3'- -UGGCCUCCGuGGAG---CUUUAugAa----GGU- -5'
18978 5' -52.7 NC_004684.1 + 2915 0.7 0.685684
Target:  5'- gGCUGGAaGUAUUUCGAGGUGCcUCCGg -3'
miRNA:   3'- -UGGCCUcCGUGGAGCUUUAUGaAGGU- -5'
18978 5' -52.7 NC_004684.1 + 20743 0.7 0.641517
Target:  5'- cGCCuGGAGGCACCgcaGGcGGUGCcgUCCAc -3'
miRNA:   3'- -UGG-CCUCCGUGGag-CU-UUAUGa-AGGU- -5'
18978 5' -52.7 NC_004684.1 + 6088 0.74 0.449115
Target:  5'- uGCCGGGGGCgGCCUCGuAAacgucguucAUGCUgaUCCAc -3'
miRNA:   3'- -UGGCCUCCG-UGGAGC-UU---------UAUGA--AGGU- -5'
18978 5' -52.7 NC_004684.1 + 3010 1.09 0.002321
Target:  5'- cACCGGAGGCACCUCGAAAUACUUCCAg -3'
miRNA:   3'- -UGGCCUCCGUGGAGCUUUAUGAAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.