Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18978 | 5' | -52.7 | NC_004684.1 | + | 25365 | 0.66 | 0.89424 |
Target: 5'- gGCCGGaAGGC-CCUUGGugcgcaGCUucUCCAg -3' miRNA: 3'- -UGGCC-UCCGuGGAGCUuua---UGA--AGGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 48973 | 0.66 | 0.89424 |
Target: 5'- gGCCGGggcGGGCGCgUCGGugcccUGCUggCCGg -3' miRNA: 3'- -UGGCC---UCCGUGgAGCUuu---AUGAa-GGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 57004 | 0.66 | 0.871561 |
Target: 5'- cGCCGGGGacgagcGCGCCaUCGggGUGCgcuggUCg- -3' miRNA: 3'- -UGGCCUC------CGUGG-AGCuuUAUGa----AGgu -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 9806 | 0.66 | 0.871561 |
Target: 5'- cGCCGGuGGCACC-CGAc--GCUcaaggCCAc -3' miRNA: 3'- -UGGCCuCCGUGGaGCUuuaUGAa----GGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 24191 | 0.66 | 0.879381 |
Target: 5'- uGCCGGGcugcGGCACCUUGAAGU---UCgGg -3' miRNA: 3'- -UGGCCU----CCGUGGAGCUUUAugaAGgU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 53527 | 0.67 | 0.828834 |
Target: 5'- cGCgGGGGGC-CCUCGGug-ACgUCCu -3' miRNA: 3'- -UGgCCUCCGuGGAGCUuuaUGaAGGu -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 8447 | 0.67 | 0.81021 |
Target: 5'- cGCCGGuGGGCAgCUCGAuGAUugUUUUc -3' miRNA: 3'- -UGGCC-UCCGUgGAGCU-UUAugAAGGu -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 25503 | 0.67 | 0.81021 |
Target: 5'- gUCGGAGGCACCcCauuGGUACUggCCGc -3' miRNA: 3'- uGGCCUCCGUGGaGcu-UUAUGAa-GGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 65826 | 0.68 | 0.790827 |
Target: 5'- cCCGGAGGCACCggCGGcucacaGGUGCa-CCGc -3' miRNA: 3'- uGGCCUCCGUGGa-GCU------UUAUGaaGGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 13029 | 0.68 | 0.800608 |
Target: 5'- cACCGGGGGUGCCgacggcggCGAAGUugg-CCGa -3' miRNA: 3'- -UGGCCUCCGUGGa-------GCUUUAugaaGGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 58511 | 0.68 | 0.770773 |
Target: 5'- gGCCGGAGGCAacggCGggGUuccgGCggCCGg -3' miRNA: 3'- -UGGCCUCCGUgga-GCuuUA----UGaaGGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 9424 | 0.68 | 0.778869 |
Target: 5'- cACCGGAGGCcuCCUCGuccccg-UCCu -3' miRNA: 3'- -UGGCCUCCGu-GGAGCuuuaugaAGGu -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 52454 | 0.68 | 0.780878 |
Target: 5'- gGCUGGGacGGCACCaUCGAGucgGUGCUgcuggaUCCGa -3' miRNA: 3'- -UGGCCU--CCGUGG-AGCUU---UAUGA------AGGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 41726 | 0.69 | 0.718301 |
Target: 5'- cACCGGAGGCGaucuCCUCcuGGUAUUUCa- -3' miRNA: 3'- -UGGCCUCCGU----GGAGcuUUAUGAAGgu -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 67021 | 0.69 | 0.718301 |
Target: 5'- cGCCGGAGGC-CUUCgccGAGGUugUggccgCCAa -3' miRNA: 3'- -UGGCCUCCGuGGAG---CUUUAugAa----GGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 2915 | 0.7 | 0.685684 |
Target: 5'- gGCUGGAaGUAUUUCGAGGUGCcUCCGg -3' miRNA: 3'- -UGGCCUcCGUGGAGCUUUAUGaAGGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 20743 | 0.7 | 0.641517 |
Target: 5'- cGCCuGGAGGCACCgcaGGcGGUGCcgUCCAc -3' miRNA: 3'- -UGG-CCUCCGUGGag-CU-UUAUGa-AGGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 6088 | 0.74 | 0.449115 |
Target: 5'- uGCCGGGGGCgGCCUCGuAAacgucguucAUGCUgaUCCAc -3' miRNA: 3'- -UGGCCUCCG-UGGAGC-UU---------UAUGA--AGGU- -5' |
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18978 | 5' | -52.7 | NC_004684.1 | + | 3010 | 1.09 | 0.002321 |
Target: 5'- cACCGGAGGCACCUCGAAAUACUUCCAg -3' miRNA: 3'- -UGGCCUCCGUGGAGCUUUAUGAAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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