miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18981 5' -60.9 NC_004684.1 + 39089 0.66 0.445827
Target:  5'- -aGGCCGGUGGuGCCuacgcacccggugACCGgguaCGCCu-- -3'
miRNA:   3'- uaCCGGCCAUC-CGG-------------UGGCa---GCGGuac -5'
18981 5' -60.9 NC_004684.1 + 13273 0.66 0.444887
Target:  5'- -cGcGCUGGU-GGCCGCCGguggcuggugcgCGCCGUc -3'
miRNA:   3'- uaC-CGGCCAuCCGGUGGCa-----------GCGGUAc -5'
18981 5' -60.9 NC_004684.1 + 60611 0.66 0.437409
Target:  5'- -aGGCCGGUcacccGGCgCA-CGUCGcCCAUGc -3'
miRNA:   3'- uaCCGGCCAu----CCG-GUgGCAGC-GGUAC- -5'
18981 5' -60.9 NC_004684.1 + 13690 0.66 0.437409
Target:  5'- gGUGGCCGGUucGGGCaCGCCGaaGaUCAUc -3'
miRNA:   3'- -UACCGGCCA--UCCG-GUGGCagC-GGUAc -5'
18981 5' -60.9 NC_004684.1 + 17143 0.66 0.437409
Target:  5'- -gGGCaaCGGUuGGgCACCGUCGUCGc- -3'
miRNA:   3'- uaCCG--GCCAuCCgGUGGCAGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 58815 0.66 0.437409
Target:  5'- cGUGcCCGGUGcGGCCAggugcCUGUgGCCGUGc -3'
miRNA:   3'- -UACcGGCCAU-CCGGU-----GGCAgCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 33821 0.66 0.434624
Target:  5'- cUGGCCGcgcugcgucgaguaGUucGGGCCACCGcCGCUg-- -3'
miRNA:   3'- uACCGGC--------------CA--UCCGGUGGCaGCGGuac -5'
18981 5' -60.9 NC_004684.1 + 49099 0.66 0.428164
Target:  5'- -cGGCaGGUgccacAGGUCGCCGUCGgCGUc -3'
miRNA:   3'- uaCCGgCCA-----UCCGGUGGCAGCgGUAc -5'
18981 5' -60.9 NC_004684.1 + 30159 0.66 0.419034
Target:  5'- -cGGCCaGUGGGCgaucaaCGCCGUCGgCGg- -3'
miRNA:   3'- uaCCGGcCAUCCG------GUGGCAGCgGUac -5'
18981 5' -60.9 NC_004684.1 + 41388 0.66 0.419034
Target:  5'- -gGGCCGau-GGCUauucgaccuACCGUCGCgGUGg -3'
miRNA:   3'- uaCCGGCcauCCGG---------UGGCAGCGgUAC- -5'
18981 5' -60.9 NC_004684.1 + 54761 0.66 0.419034
Target:  5'- gGUGGCucccCGGUAGGgagaCACCaUgGCCAUGg -3'
miRNA:   3'- -UACCG----GCCAUCCg---GUGGcAgCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 55141 0.67 0.410025
Target:  5'- aAUGGCCGGUuguGGCgguggaGCCGcUGCCGg- -3'
miRNA:   3'- -UACCGGCCAu--CCGg-----UGGCaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 22490 0.67 0.410025
Target:  5'- -gGGCUGGuUAGGaauCCGCCGaCGCCGc- -3'
miRNA:   3'- uaCCGGCC-AUCC---GGUGGCaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 40215 0.67 0.410025
Target:  5'- -aGGUCGGUgccgAGGCCGCCaG-CGCCc-- -3'
miRNA:   3'- uaCCGGCCA----UCCGGUGG-CaGCGGuac -5'
18981 5' -60.9 NC_004684.1 + 42213 0.67 0.410025
Target:  5'- gGUGGCCGacguGGCCGCCGgUGUCGg- -3'
miRNA:   3'- -UACCGGCcau-CCGGUGGCaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 19567 0.67 0.404677
Target:  5'- cUGGCUccaGGggcgcaugucgcgcGGGCCACCGcCGCCcgGg -3'
miRNA:   3'- uACCGG---CCa-------------UCCGGUGGCaGCGGuaC- -5'
18981 5' -60.9 NC_004684.1 + 57056 0.67 0.401136
Target:  5'- cUGGCacaGGUuGGCCuccacGCUGUgCGCCGUGc -3'
miRNA:   3'- uACCGg--CCAuCCGG-----UGGCA-GCGGUAC- -5'
18981 5' -60.9 NC_004684.1 + 43396 0.67 0.401136
Target:  5'- -cGGcCCGGagaacGGGUCGCCGcCGCCGa- -3'
miRNA:   3'- uaCC-GGCCa----UCCGGUGGCaGCGGUac -5'
18981 5' -60.9 NC_004684.1 + 57039 0.67 0.401136
Target:  5'- -cGGUcaCGGUGGGCCACgGcaccagCGCgGUGg -3'
miRNA:   3'- uaCCG--GCCAUCCGGUGgCa-----GCGgUAC- -5'
18981 5' -60.9 NC_004684.1 + 39735 0.67 0.401136
Target:  5'- -aGGCCGGUaccuggAGGUgACCGU-GCCGc- -3'
miRNA:   3'- uaCCGGCCA------UCCGgUGGCAgCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.