miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 5' -53.7 NC_004684.1 + 50050 0.66 0.849849
Target:  5'- cAGCGACGGCGggcauuucuacuuccGGGugccCGACGGuGUGGAg -3'
miRNA:   3'- -UUGCUGCUGC---------------UCCu---GUUGCU-CACCUa -5'
18982 5' -53.7 NC_004684.1 + 53399 0.66 0.837663
Target:  5'- uACGACGACcaGGGugAcCGGGUGGu- -3'
miRNA:   3'- uUGCUGCUGc-UCCugUuGCUCACCua -5'
18982 5' -53.7 NC_004684.1 + 18601 0.67 0.790849
Target:  5'- gGACGAUGGCuuuGAGGcCAGCGAcUGGGc -3'
miRNA:   3'- -UUGCUGCUG---CUCCuGUUGCUcACCUa -5'
18982 5' -53.7 NC_004684.1 + 40732 0.67 0.790849
Target:  5'- cAGCG-CGGCGGGGGCggUGgcGGUGGu- -3'
miRNA:   3'- -UUGCuGCUGCUCCUGuuGC--UCACCua -5'
18982 5' -53.7 NC_004684.1 + 32071 0.67 0.780944
Target:  5'- cACGGCGACGcaccgcgucuGGGugAGCGuuggccaggcGGUGGAg -3'
miRNA:   3'- uUGCUGCUGC----------UCCugUUGC----------UCACCUa -5'
18982 5' -53.7 NC_004684.1 + 7761 0.68 0.739884
Target:  5'- -uCGucCGACGAcGACAGCGAcGUGGAg -3'
miRNA:   3'- uuGCu-GCUGCUcCUGUUGCU-CACCUa -5'
18982 5' -53.7 NC_004684.1 + 52824 0.68 0.739884
Target:  5'- cACGACGACcugGAGGACAGCGccuacgagcGUGGc- -3'
miRNA:   3'- uUGCUGCUG---CUCCUGUUGCu--------CACCua -5'
18982 5' -53.7 NC_004684.1 + 11042 0.68 0.729317
Target:  5'- cGGCGugGugGAGGACGccCGucUGGAg -3'
miRNA:   3'- -UUGCugCugCUCCUGUu-GCucACCUa -5'
18982 5' -53.7 NC_004684.1 + 12812 0.68 0.728255
Target:  5'- cGACGACGcgccCGAGGACGGCGGcucugcugccgacGUGGu- -3'
miRNA:   3'- -UUGCUGCu---GCUCCUGUUGCU-------------CACCua -5'
18982 5' -53.7 NC_004684.1 + 64177 0.69 0.664261
Target:  5'- cACaGCG-CGAGcgcGACGACGAGUGGGUg -3'
miRNA:   3'- uUGcUGCuGCUC---CUGUUGCUCACCUA- -5'
18982 5' -53.7 NC_004684.1 + 40370 0.7 0.598094
Target:  5'- cAACGACGGCGcGGuCAACGGGgUGGc- -3'
miRNA:   3'- -UUGCUGCUGCuCCuGUUGCUC-ACCua -5'
18982 5' -53.7 NC_004684.1 + 62017 0.71 0.554431
Target:  5'- cGACGGgGACGGGGGCcACGGGguugagcgGGGUg -3'
miRNA:   3'- -UUGCUgCUGCUCCUGuUGCUCa-------CCUA- -5'
18982 5' -53.7 NC_004684.1 + 432 0.71 0.530807
Target:  5'- cGACGugGACGAGGACAccgcuGCGcgcaucguggccGUGGAc -3'
miRNA:   3'- -UUGCugCUGCUCCUGU-----UGCu-----------CACCUa -5'
18982 5' -53.7 NC_004684.1 + 64717 0.72 0.4705
Target:  5'- cACGACGcCGAcGGCAACGAGcUGGAg -3'
miRNA:   3'- uUGCUGCuGCUcCUGUUGCUC-ACCUa -5'
18982 5' -53.7 NC_004684.1 + 56170 0.75 0.348905
Target:  5'- cGACGGCGACGAcGGCGGCGcuaucgagcgcccGGUGGAUg -3'
miRNA:   3'- -UUGCUGCUGCUcCUGUUGC-------------UCACCUA- -5'
18982 5' -53.7 NC_004684.1 + 49163 0.76 0.294482
Target:  5'- uGGCGGCGACGuGGGCGACGAGcaccUGGc- -3'
miRNA:   3'- -UUGCUGCUGCuCCUGUUGCUC----ACCua -5'
18982 5' -53.7 NC_004684.1 + 30759 0.81 0.143673
Target:  5'- cGAUGAccacccCGACGAGGugGACGGGUGGGUg -3'
miRNA:   3'- -UUGCU------GCUGCUCCugUUGCUCACCUA- -5'
18982 5' -53.7 NC_004684.1 + 6216 1.03 0.004617
Target:  5'- cAACGACGACGAGGACAACGAGUGGAUc -3'
miRNA:   3'- -UUGCUGCUGCUCCUGUUGCUCACCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.