Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18983 | 3' | -54 | NC_004684.1 | + | 6388 | 0.68 | 0.708692 |
Target: 5'- gCAGCguguugGCGAaguugGCCGAGGUGuacagcucGGCGGCGg -3' miRNA: 3'- -GUCGa-----UGCUg----UGGUUCUAC--------CCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 55920 | 0.68 | 0.708692 |
Target: 5'- gAGCUG-GugGCCAAGGUggaccgGGGCGAgGc -3' miRNA: 3'- gUCGAUgCugUGGUUCUA------CCCGCUgC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 6838 | 0.68 | 0.719345 |
Target: 5'- uGGcCUACGGCGCgAA---GGGCGACGc -3' miRNA: 3'- gUC-GAUGCUGUGgUUcuaCCCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 55857 | 0.68 | 0.719345 |
Target: 5'- gCAGUgcgacguCGACGCCAAGGUGGccGgGGCa -3' miRNA: 3'- -GUCGau-----GCUGUGGUUCUACC--CgCUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 57771 | 0.68 | 0.729913 |
Target: 5'- gCGGuCUACGACACCGAcaccGAcUGGGCcaaGACc -3' miRNA: 3'- -GUC-GAUGCUGUGGUU----CU-ACCCG---CUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 61875 | 0.68 | 0.729913 |
Target: 5'- aCAGCUGCGcCACCA----GGGCGuCa -3' miRNA: 3'- -GUCGAUGCuGUGGUucuaCCCGCuGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 35524 | 0.68 | 0.729913 |
Target: 5'- -cGCUACuGCACCGAGugcGGGC-ACGa -3' miRNA: 3'- guCGAUGcUGUGGUUCua-CCCGcUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 27167 | 0.68 | 0.740384 |
Target: 5'- cCAGCUACGGCGgCGAccuggccacggcGAUcuuuGGCGGCGg -3' miRNA: 3'- -GUCGAUGCUGUgGUU------------CUAc---CCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 53790 | 0.68 | 0.740384 |
Target: 5'- cCGGC-GCGGCGCUggGAUcGGGUuGCGc -3' miRNA: 3'- -GUCGaUGCUGUGGuuCUA-CCCGcUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 30305 | 0.68 | 0.740384 |
Target: 5'- uCGGCUACGACGaCGAGGUcgGGGCa--- -3' miRNA: 3'- -GUCGAUGCUGUgGUUCUA--CCCGcugc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 3562 | 0.67 | 0.750747 |
Target: 5'- gCGGCccgGCGugGCUGAGcuUGGGCGAg- -3' miRNA: 3'- -GUCGa--UGCugUGGUUCu-ACCCGCUgc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 24283 | 0.67 | 0.76099 |
Target: 5'- gGGCaccGCaGGCACCGGcauuuUGGGCGGCGg -3' miRNA: 3'- gUCGa--UG-CUGUGGUUcu---ACCCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 24986 | 0.67 | 0.76099 |
Target: 5'- gCGGCgGCGGCcaucucguaGCCAcGAUGGcGCGGCu -3' miRNA: 3'- -GUCGaUGCUG---------UGGUuCUACC-CGCUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 19683 | 0.67 | 0.780084 |
Target: 5'- cCGGCgcgGCGGCaaggccuggccgaGCCAAGAccUGGGaCGGCc -3' miRNA: 3'- -GUCGa--UGCUG-------------UGGUUCU--ACCC-GCUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 26368 | 0.67 | 0.781074 |
Target: 5'- gGGCaACGGCACCGGcaacGUcGGCGGCGa -3' miRNA: 3'- gUCGaUGCUGUGGUUc---UAcCCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 49168 | 0.67 | 0.790892 |
Target: 5'- cCGGU--UGGCGgCGAcGUGGGCGACGa -3' miRNA: 3'- -GUCGauGCUGUgGUUcUACCCGCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 43459 | 0.67 | 0.800547 |
Target: 5'- gGGC-GCGGCAgC-AGGUGcGGCGGCa -3' miRNA: 3'- gUCGaUGCUGUgGuUCUAC-CCGCUGc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 26739 | 0.67 | 0.800547 |
Target: 5'- aGGCccGCGACACCcuGAUGGagaugacCGACGa -3' miRNA: 3'- gUCGa-UGCUGUGGuuCUACCc------GCUGC- -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 40542 | 0.66 | 0.810027 |
Target: 5'- uGGCgaccuccGCGACcuCCAGGAgcUGGGCGAa- -3' miRNA: 3'- gUCGa------UGCUGu-GGUUCU--ACCCGCUgc -5' |
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18983 | 3' | -54 | NC_004684.1 | + | 66436 | 0.66 | 0.810027 |
Target: 5'- aCAGgUACGACuuuacgUCAGGGU-GGCGGCGu -3' miRNA: 3'- -GUCgAUGCUGu-----GGUUCUAcCCGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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