miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 32418 0.71 0.524637
Target:  5'- aCAGCaGCGGCACCuc---GGGCGugGc -3'
miRNA:   3'- -GUCGaUGCUGUGGuucuaCCCGCugC- -5'
18983 3' -54 NC_004684.1 + 33475 0.69 0.687174
Target:  5'- uCGGCgGCGGCugCGguGGAcGcGGCGGCGg -3'
miRNA:   3'- -GUCGaUGCUGugGU--UCUaC-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 35524 0.68 0.729913
Target:  5'- -cGCUACuGCACCGAGugcGGGC-ACGa -3'
miRNA:   3'- guCGAUGcUGUGGUUCua-CCCGcUGC- -5'
18983 3' -54 NC_004684.1 + 37513 0.69 0.676331
Target:  5'- cCGGUUACGACgACCu-GAUGcacgacugcGGCGGCGa -3'
miRNA:   3'- -GUCGAUGCUG-UGGuuCUAC---------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 39451 0.71 0.567289
Target:  5'- gGGCUGguucccCGACACCAuugacgaGUGGGCGGCc -3'
miRNA:   3'- gUCGAU------GCUGUGGUuc-----UACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 40542 0.66 0.810027
Target:  5'- uGGCgaccuccGCGACcuCCAGGAgcUGGGCGAa- -3'
miRNA:   3'- gUCGa------UGCUGu-GGUUCU--ACCCGCUgc -5'
18983 3' -54 NC_004684.1 + 40683 0.66 0.819323
Target:  5'- cCAGCaaggugGCGACgaACUucAGcUGGGCGGCGg -3'
miRNA:   3'- -GUCGa-----UGCUG--UGGu-UCuACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 41323 0.69 0.654532
Target:  5'- gGGCUACGGCACCGcGAccGcCGACGg -3'
miRNA:   3'- gUCGAUGCUGUGGUuCUacCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 41565 0.69 0.685009
Target:  5'- cCGGgUGCGACACCuugcuucGGCGGCGg -3'
miRNA:   3'- -GUCgAUGCUGUGGuucuac-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 42725 0.68 0.697964
Target:  5'- -cGCUgGCGGCACCAGcaccgGcGGCGGCGg -3'
miRNA:   3'- guCGA-UGCUGUGGUUcua--C-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 43430 0.74 0.369948
Target:  5'- aGGCccgGCGAgGCCGAGGUcGGuGCGGCGg -3'
miRNA:   3'- gUCGa--UGCUgUGGUUCUA-CC-CGCUGC- -5'
18983 3' -54 NC_004684.1 + 43459 0.67 0.800547
Target:  5'- gGGC-GCGGCAgC-AGGUGcGGCGGCa -3'
miRNA:   3'- gUCGaUGCUGUgGuUCUAC-CCGCUGc -5'
18983 3' -54 NC_004684.1 + 45085 0.66 0.819323
Target:  5'- uGGUUGCGcCGCCAGGA-GGcCGACu -3'
miRNA:   3'- gUCGAUGCuGUGGUUCUaCCcGCUGc -5'
18983 3' -54 NC_004684.1 + 45512 0.7 0.63265
Target:  5'- gCGGCgGCGACACCGaggccaAGGUGGuGCGcCa -3'
miRNA:   3'- -GUCGaUGCUGUGGU------UCUACC-CGCuGc -5'
18983 3' -54 NC_004684.1 + 48702 0.79 0.197103
Target:  5'- aGGCgcACGGCACCGAGGUGGGCaAUGa -3'
miRNA:   3'- gUCGa-UGCUGUGGUUCUACCCGcUGC- -5'
18983 3' -54 NC_004684.1 + 49168 0.67 0.790892
Target:  5'- cCGGU--UGGCGgCGAcGUGGGCGACGa -3'
miRNA:   3'- -GUCGauGCUGUgGUUcUACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 49521 0.69 0.683926
Target:  5'- gCGGCaACGGCACCAAGAccaUGuccaagcuccagguGGUGGCGc -3'
miRNA:   3'- -GUCGaUGCUGUGGUUCU---AC--------------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 50856 0.66 0.846004
Target:  5'- gCGGacaUGgGACACC--GAUGGGCGAa- -3'
miRNA:   3'- -GUCg--AUgCUGUGGuuCUACCCGCUgc -5'
18983 3' -54 NC_004684.1 + 53790 0.68 0.740384
Target:  5'- cCGGC-GCGGCGCUggGAUcGGGUuGCGc -3'
miRNA:   3'- -GUCGaUGCUGUGGuuCUA-CCCGcUGC- -5'
18983 3' -54 NC_004684.1 + 55857 0.68 0.719345
Target:  5'- gCAGUgcgacguCGACGCCAAGGUGGccGgGGCa -3'
miRNA:   3'- -GUCGau-----GCUGUGGUUCUACC--CgCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.