miRNA display CGI


Results 61 - 74 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 55920 0.68 0.708692
Target:  5'- gAGCUG-GugGCCAAGGUggaccgGGGCGAgGc -3'
miRNA:   3'- gUCGAUgCugUGGUUCUA------CCCGCUgC- -5'
18983 3' -54 NC_004684.1 + 57771 0.68 0.729913
Target:  5'- gCGGuCUACGACACCGAcaccGAcUGGGCcaaGACc -3'
miRNA:   3'- -GUC-GAUGCUGUGGUU----CU-ACCCG---CUGc -5'
18983 3' -54 NC_004684.1 + 58311 0.69 0.676331
Target:  5'- aCAGCUcaccgGCGACGCCGGGucAUGGcGCGccCGg -3'
miRNA:   3'- -GUCGA-----UGCUGUGGUUC--UACC-CGCu-GC- -5'
18983 3' -54 NC_004684.1 + 61006 0.71 0.535196
Target:  5'- aGGCgUGCGACGCCGuggccgAGAUGGuCGAUGa -3'
miRNA:   3'- gUCG-AUGCUGUGGU------UCUACCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 61418 0.66 0.810027
Target:  5'- cCAcCUACGcCGCCGA---GGGCGGCGg -3'
miRNA:   3'- -GUcGAUGCuGUGGUUcuaCCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 61582 0.69 0.654532
Target:  5'- gCAGCUGgGACGCCucGGUGGuCGAgGc -3'
miRNA:   3'- -GUCGAUgCUGUGGuuCUACCcGCUgC- -5'
18983 3' -54 NC_004684.1 + 61875 0.68 0.729913
Target:  5'- aCAGCUGCGcCACCA----GGGCGuCa -3'
miRNA:   3'- -GUCGAUGCuGUGGUucuaCCCGCuGc -5'
18983 3' -54 NC_004684.1 + 62177 0.74 0.396549
Target:  5'- cCAGCUACGACgacgcgcuggcgACCGugcAGcaGUGGGUGGCGg -3'
miRNA:   3'- -GUCGAUGCUG------------UGGU---UC--UACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 63496 0.73 0.424352
Target:  5'- cCAGCUGCGccuGCGCCAGca-GGGCGGCc -3'
miRNA:   3'- -GUCGAUGC---UGUGGUUcuaCCCGCUGc -5'
18983 3' -54 NC_004684.1 + 63604 0.72 0.473161
Target:  5'- gAGCUGCGACGCCAGGccgcccugcUGGcGCaGGCGc -3'
miRNA:   3'- gUCGAUGCUGUGGUUCu--------ACC-CG-CUGC- -5'
18983 3' -54 NC_004684.1 + 64919 0.69 0.654532
Target:  5'- uGGCgGCGAC-CCAGGu--GGCGGCGg -3'
miRNA:   3'- gUCGaUGCUGuGGUUCuacCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 66341 0.68 0.697964
Target:  5'- cCGGU---GACGCCGGGgcGGGCGGCc -3'
miRNA:   3'- -GUCGaugCUGUGGUUCuaCCCGCUGc -5'
18983 3' -54 NC_004684.1 + 66436 0.66 0.810027
Target:  5'- aCAGgUACGACuuuacgUCAGGGU-GGCGGCGu -3'
miRNA:   3'- -GUCgAUGCUGu-----GGUUCUAcCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 66634 0.7 0.610767
Target:  5'- gCGGcCUugGugGCCAcGAUGgccucGGCGGCGg -3'
miRNA:   3'- -GUC-GAugCugUGGUuCUAC-----CCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.