miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 28339 0.66 0.810027
Target:  5'- aGGCUGgcCGGgucCACCGcgcugugcuccGGGUGGGCGGCc -3'
miRNA:   3'- gUCGAU--GCU---GUGGU-----------UCUACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 27886 0.7 0.609674
Target:  5'- uCGGCUACGACgacaguuggcccgGCCugcgcGAGuuccUGGGCGACa -3'
miRNA:   3'- -GUCGAUGCUG-------------UGG-----UUCu---ACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 27191 0.7 0.621704
Target:  5'- cCAGCgcaaaguCGGUACCGAucUGGGCGGCGa -3'
miRNA:   3'- -GUCGau-----GCUGUGGUUcuACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 27167 0.68 0.740384
Target:  5'- cCAGCUACGGCGgCGAccuggccacggcGAUcuuuGGCGGCGg -3'
miRNA:   3'- -GUCGAUGCUGUgGUU------------CUAc---CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 26739 0.67 0.800547
Target:  5'- aGGCccGCGACACCcuGAUGGagaugacCGACGa -3'
miRNA:   3'- gUCGa-UGCUGUGGuuCUACCc------GCUGC- -5'
18983 3' -54 NC_004684.1 + 26368 0.67 0.781074
Target:  5'- gGGCaACGGCACCGGcaacGUcGGCGGCGa -3'
miRNA:   3'- gUCGaUGCUGUGGUUc---UAcCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 25272 0.69 0.676331
Target:  5'- aAGCUGCG-CACCAAGGgccuuccgGccacaccaGGCGGCGg -3'
miRNA:   3'- gUCGAUGCuGUGGUUCUa-------C--------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 24986 0.67 0.76099
Target:  5'- gCGGCgGCGGCcaucucguaGCCAcGAUGGcGCGGCu -3'
miRNA:   3'- -GUCGaUGCUG---------UGGUuCUACC-CGCUGc -5'
18983 3' -54 NC_004684.1 + 24897 0.72 0.493464
Target:  5'- uGGCUACGAgauggccgcCGCCGcGAucagcgcgcUGGGCGGCGa -3'
miRNA:   3'- gUCGAUGCU---------GUGGUuCU---------ACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 24713 0.7 0.610767
Target:  5'- uCAGCgACGACaacACCGAGcUGGGCGuGCu -3'
miRNA:   3'- -GUCGaUGCUG---UGGUUCuACCCGC-UGc -5'
18983 3' -54 NC_004684.1 + 24604 0.66 0.846004
Target:  5'- aCAGCggACGugGCgCGc-AUGGGCGGCc -3'
miRNA:   3'- -GUCGa-UGCugUG-GUucUACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 24283 0.67 0.76099
Target:  5'- gGGCaccGCaGGCACCGGcauuuUGGGCGGCGg -3'
miRNA:   3'- gUCGa--UG-CUGUGGUUcu---ACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 24187 0.68 0.694734
Target:  5'- gGGCUGCGGCACCuugaaguucGGGAUGGucacgccguuguagGUGACc -3'
miRNA:   3'- gUCGAUGCUGUGG---------UUCUACC--------------CGCUGc -5'
18983 3' -54 NC_004684.1 + 21091 0.66 0.810027
Target:  5'- gAGCUAUGgguGCGCCGcaGGAUcGGGcCGACc -3'
miRNA:   3'- gUCGAUGC---UGUGGU--UCUA-CCC-GCUGc -5'
18983 3' -54 NC_004684.1 + 20306 0.66 0.846004
Target:  5'- -uGCgcCGACACCAug--GcGGCGGCGg -3'
miRNA:   3'- guCGauGCUGUGGUucuaC-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 20122 0.71 0.524637
Target:  5'- gGGCgGCGGCACCAAGAacgUGcgguucuucgccGGUGACGg -3'
miRNA:   3'- gUCGaUGCUGUGGUUCU---AC------------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 19683 0.67 0.780084
Target:  5'- cCGGCgcgGCGGCaaggccuggccgaGCCAAGAccUGGGaCGGCc -3'
miRNA:   3'- -GUCGa--UGCUG-------------UGGUUCU--ACCC-GCUGc -5'
18983 3' -54 NC_004684.1 + 18607 0.7 0.621704
Target:  5'- uGGCUuuGAgGCCAGcGAcUGGGCGACc -3'
miRNA:   3'- gUCGAugCUgUGGUU-CU-ACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 18423 0.66 0.819323
Target:  5'- uCGGCUccggggGCGGCACCGgcgugcGGAacaGGGUGAUGu -3'
miRNA:   3'- -GUCGA------UGCUGUGGU------UCUa--CCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 16787 0.66 0.810027
Target:  5'- cCAGgUGCGGCGCgucguguGGUGGGCG-CGc -3'
miRNA:   3'- -GUCgAUGCUGUGguu----CUACCCGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.