miRNA display CGI


Results 41 - 60 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 58311 0.69 0.676331
Target:  5'- aCAGCUcaccgGCGACGCCGGGucAUGGcGCGccCGg -3'
miRNA:   3'- -GUCGA-----UGCUGUGGUUC--UACC-CGCu-GC- -5'
18983 3' -54 NC_004684.1 + 25272 0.69 0.676331
Target:  5'- aAGCUGCG-CACCAAGGgccuuccgGccacaccaGGCGGCGg -3'
miRNA:   3'- gUCGAUGCuGUGGUUCUa-------C--------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 30130 0.69 0.669805
Target:  5'- gAGCUACaGGCACCGcgcAGugugcgcgucggccaGUGGGCGAUc -3'
miRNA:   3'- gUCGAUG-CUGUGGU---UC---------------UACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 64919 0.69 0.654532
Target:  5'- uGGCgGCGAC-CCAGGu--GGCGGCGg -3'
miRNA:   3'- gUCGaUGCUGuGGUUCuacCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 61582 0.69 0.654532
Target:  5'- gCAGCUGgGACGCCucGGUGGuCGAgGc -3'
miRNA:   3'- -GUCGAUgCUGUGGuuCUACCcGCUgC- -5'
18983 3' -54 NC_004684.1 + 15760 0.69 0.654532
Target:  5'- gCAGCUgcgcaGCGGCACCuaucGcgGcGGCGACa -3'
miRNA:   3'- -GUCGA-----UGCUGUGGuu--CuaC-CCGCUGc -5'
18983 3' -54 NC_004684.1 + 41323 0.69 0.654532
Target:  5'- gGGCUACGGCACCGcGAccGcCGACGg -3'
miRNA:   3'- gUCGAUGCUGUGGUuCUacCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 4775 0.7 0.621704
Target:  5'- aAGCgccACGGCuCCGGGGUGcGCGACGc -3'
miRNA:   3'- gUCGa--UGCUGuGGUUCUACcCGCUGC- -5'
18983 3' -54 NC_004684.1 + 27191 0.7 0.621704
Target:  5'- cCAGCgcaaaguCGGUACCGAucUGGGCGGCGa -3'
miRNA:   3'- -GUCGau-----GCUGUGGUUcuACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 45512 0.7 0.63265
Target:  5'- gCGGCgGCGACACCGaggccaAGGUGGuGCGcCa -3'
miRNA:   3'- -GUCGaUGCUGUGGU------UCUACC-CGCuGc -5'
18983 3' -54 NC_004684.1 + 29137 0.69 0.643597
Target:  5'- uCAGCUGC-ACACCccGGUGGGUGGa- -3'
miRNA:   3'- -GUCGAUGcUGUGGuuCUACCCGCUgc -5'
18983 3' -54 NC_004684.1 + 13204 0.69 0.665447
Target:  5'- aAGCUGCcGCGCUGGccGGUgGGGCGGCGu -3'
miRNA:   3'- gUCGAUGcUGUGGUU--CUA-CCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 12844 0.69 0.665447
Target:  5'- gCAGCcGCGcGgGCCAAGA-GGGCGuCGa -3'
miRNA:   3'- -GUCGaUGC-UgUGGUUCUaCCCGCuGC- -5'
18983 3' -54 NC_004684.1 + 39451 0.71 0.567289
Target:  5'- gGGCUGguucccCGACACCAuugacgaGUGGGCGGCc -3'
miRNA:   3'- gUCGAU------GCUGUGGUuc-----UACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 61006 0.71 0.535196
Target:  5'- aGGCgUGCGACGCCGuggccgAGAUGGuCGAUGa -3'
miRNA:   3'- gUCG-AUGCUGUGGU------UCUACCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 15271 0.72 0.503765
Target:  5'- -cGCUGCGcaGCACCAgucccAGGUGcguGGCGGCGg -3'
miRNA:   3'- guCGAUGC--UGUGGU-----UCUAC---CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 63604 0.72 0.473161
Target:  5'- gAGCUGCGACGCCAGGccgcccugcUGGcGCaGGCGc -3'
miRNA:   3'- gUCGAUGCUGUGGUUCu--------ACC-CG-CUGC- -5'
18983 3' -54 NC_004684.1 + 62177 0.74 0.396549
Target:  5'- cCAGCUACGACgacgcgcuggcgACCGugcAGcaGUGGGUGGCGg -3'
miRNA:   3'- -GUCGAUGCUG------------UGGU---UC--UACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 48702 0.79 0.197103
Target:  5'- aGGCgcACGGCACCGAGGUGGGCaAUGa -3'
miRNA:   3'- gUCGa-UGCUGUGGUUCUACCCGcUGC- -5'
18983 3' -54 NC_004684.1 + 50856 0.66 0.846004
Target:  5'- gCGGacaUGgGACACC--GAUGGGCGAa- -3'
miRNA:   3'- -GUCg--AUgCUGUGGuuCUACCCGCUgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.