miRNA display CGI


Results 61 - 74 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 24187 0.68 0.694734
Target:  5'- gGGCUGCGGCACCuugaaguucGGGAUGGucacgccguuguagGUGACc -3'
miRNA:   3'- gUCGAUGCUGUGG---------UUCUACC--------------CGCUGc -5'
18983 3' -54 NC_004684.1 + 49521 0.69 0.683926
Target:  5'- gCGGCaACGGCACCAAGAccaUGuccaagcuccagguGGUGGCGc -3'
miRNA:   3'- -GUCGaUGCUGUGGUUCU---AC--------------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 48702 0.79 0.197103
Target:  5'- aGGCgcACGGCACCGAGGUGGGCaAUGa -3'
miRNA:   3'- gUCGa-UGCUGUGGUUCUACCCGcUGC- -5'
18983 3' -54 NC_004684.1 + 62177 0.74 0.396549
Target:  5'- cCAGCUACGACgacgcgcuggcgACCGugcAGcaGUGGGUGGCGg -3'
miRNA:   3'- -GUCGAUGCUG------------UGGU---UC--UACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 63604 0.72 0.473161
Target:  5'- gAGCUGCGACGCCAGGccgcccugcUGGcGCaGGCGc -3'
miRNA:   3'- gUCGAUGCUGUGGUUCu--------ACC-CG-CUGC- -5'
18983 3' -54 NC_004684.1 + 15271 0.72 0.503765
Target:  5'- -cGCUGCGcaGCACCAgucccAGGUGcguGGCGGCGg -3'
miRNA:   3'- guCGAUGC--UGUGGU-----UCUAC---CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 61006 0.71 0.535196
Target:  5'- aGGCgUGCGACGCCGuggccgAGAUGGuCGAUGa -3'
miRNA:   3'- gUCG-AUGCUGUGGU------UCUACCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 39451 0.71 0.567289
Target:  5'- gGGCUGguucccCGACACCAuugacgaGUGGGCGGCc -3'
miRNA:   3'- gUCGAU------GCUGUGGUuc-----UACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 27191 0.7 0.621704
Target:  5'- cCAGCgcaaaguCGGUACCGAucUGGGCGGCGa -3'
miRNA:   3'- -GUCGau-----GCUGUGGUUcuACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 45512 0.7 0.63265
Target:  5'- gCGGCgGCGACACCGaggccaAGGUGGuGCGcCa -3'
miRNA:   3'- -GUCGaUGCUGUGGU------UCUACC-CGCuGc -5'
18983 3' -54 NC_004684.1 + 29137 0.69 0.643597
Target:  5'- uCAGCUGC-ACACCccGGUGGGUGGa- -3'
miRNA:   3'- -GUCGAUGcUGUGGuuCUACCCGCUgc -5'
18983 3' -54 NC_004684.1 + 13204 0.69 0.665447
Target:  5'- aAGCUGCcGCGCUGGccGGUgGGGCGGCGu -3'
miRNA:   3'- gUCGAUGcUGUGGUU--CUA-CCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 12844 0.69 0.665447
Target:  5'- gCAGCcGCGcGgGCCAAGA-GGGCGuCGa -3'
miRNA:   3'- -GUCGaUGC-UgUGGUUCUaCCCGCuGC- -5'
18983 3' -54 NC_004684.1 + 6361 1.08 0.002051
Target:  5'- cCAGCUACGACACCAAGAUGGGCGACGc -3'
miRNA:   3'- -GUCGAUGCUGUGGUUCUACCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.