miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18983 3' -54 NC_004684.1 + 63604 0.72 0.473161
Target:  5'- gAGCUGCGACGCCAGGccgcccugcUGGcGCaGGCGc -3'
miRNA:   3'- gUCGAUGCUGUGGUUCu--------ACC-CG-CUGC- -5'
18983 3' -54 NC_004684.1 + 30489 0.66 0.828424
Target:  5'- -uGCcACGGCagcGCCGGGAUGcGCGugGg -3'
miRNA:   3'- guCGaUGCUG---UGGUUCUACcCGCugC- -5'
18983 3' -54 NC_004684.1 + 24283 0.67 0.76099
Target:  5'- gGGCaccGCaGGCACCGGcauuuUGGGCGGCGg -3'
miRNA:   3'- gUCGa--UG-CUGUGGUUcu---ACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 62177 0.74 0.396549
Target:  5'- cCAGCUACGACgacgcgcuggcgACCGugcAGcaGUGGGUGGCGg -3'
miRNA:   3'- -GUCGAUGCUG------------UGGU---UC--UACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 48702 0.79 0.197103
Target:  5'- aGGCgcACGGCACCGAGGUGGGCaAUGa -3'
miRNA:   3'- gUCGa-UGCUGUGGUUCUACCCGcUGC- -5'
18983 3' -54 NC_004684.1 + 6361 1.08 0.002051
Target:  5'- cCAGCUACGACACCAAGAUGGGCGACGc -3'
miRNA:   3'- -GUCGAUGCUGUGGUUCUACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 32418 0.71 0.524637
Target:  5'- aCAGCaGCGGCACCuc---GGGCGugGc -3'
miRNA:   3'- -GUCGaUGCUGUGGuucuaCCCGCugC- -5'
18983 3' -54 NC_004684.1 + 63496 0.73 0.424352
Target:  5'- cCAGCUGCGccuGCGCCAGca-GGGCGGCc -3'
miRNA:   3'- -GUCGAUGC---UGUGGUUcuaCCCGCUGc -5'
18983 3' -54 NC_004684.1 + 61875 0.68 0.729913
Target:  5'- aCAGCUGCGcCACCA----GGGCGuCa -3'
miRNA:   3'- -GUCGAUGCuGUGGUucuaCCCGCuGc -5'
18983 3' -54 NC_004684.1 + 55857 0.68 0.719345
Target:  5'- gCAGUgcgacguCGACGCCAAGGUGGccGgGGCa -3'
miRNA:   3'- -GUCGau-----GCUGUGGUUCUACC--CgCUGc -5'
18983 3' -54 NC_004684.1 + 41323 0.69 0.654532
Target:  5'- gGGCUACGGCACCGcGAccGcCGACGg -3'
miRNA:   3'- gUCGAUGCUGUGGUuCUacCcGCUGC- -5'
18983 3' -54 NC_004684.1 + 4775 0.7 0.621704
Target:  5'- aAGCgccACGGCuCCGGGGUGcGCGACGc -3'
miRNA:   3'- gUCGa--UGCUGuGGUUCUACcCGCUGC- -5'
18983 3' -54 NC_004684.1 + 18607 0.7 0.621704
Target:  5'- uGGCUuuGAgGCCAGcGAcUGGGCGACc -3'
miRNA:   3'- gUCGAugCUgUGGUU-CU-ACCCGCUGc -5'
18983 3' -54 NC_004684.1 + 24713 0.7 0.610767
Target:  5'- uCAGCgACGACaacACCGAGcUGGGCGuGCu -3'
miRNA:   3'- -GUCGaUGCUG---UGGUUCuACCCGC-UGc -5'
18983 3' -54 NC_004684.1 + 24897 0.72 0.493464
Target:  5'- uGGCUACGAgauggccgcCGCCGcGAucagcgcgcUGGGCGGCGa -3'
miRNA:   3'- gUCGAUGCU---------GUGGUuCU---------ACCCGCUGC- -5'
18983 3' -54 NC_004684.1 + 33475 0.69 0.687174
Target:  5'- uCGGCgGCGGCugCGguGGAcGcGGCGGCGg -3'
miRNA:   3'- -GUCGaUGCUGugGU--UCUaC-CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 66341 0.68 0.697964
Target:  5'- cCGGU---GACGCCGGGgcGGGCGGCc -3'
miRNA:   3'- -GUCGaugCUGUGGUUCuaCCCGCUGc -5'
18983 3' -54 NC_004684.1 + 6388 0.68 0.708692
Target:  5'- gCAGCguguugGCGAaguugGCCGAGGUGuacagcucGGCGGCGg -3'
miRNA:   3'- -GUCGa-----UGCUg----UGGUUCUAC--------CCGCUGC- -5'
18983 3' -54 NC_004684.1 + 55920 0.68 0.708692
Target:  5'- gAGCUG-GugGCCAAGGUggaccgGGGCGAgGc -3'
miRNA:   3'- gUCGAUgCugUGGUUCUA------CCCGCUgC- -5'
18983 3' -54 NC_004684.1 + 6838 0.68 0.719345
Target:  5'- uGGcCUACGGCGCgAA---GGGCGACGc -3'
miRNA:   3'- gUC-GAUGCUGUGgUUcuaCCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.